Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetrahymena_20borealis_20[genbank_20GCA_5F000260095.1_202012-05-01] 325 sequences; 93,506,076 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq77 104 2e-17 seq81 98.7 1e-15 seq121 89.7 5e-13 >seq77 Length=437778 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || |||| ||| | || ||||| |||| |||||||||||||| || ||||| ||| Sbjct 1695 CCACCTCTTAATCTTAATACTAAGTGAAGAGTAGATTCTTTTTGAATATTGTAGTCGGAA 1754 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || || ||||||||||||||||||||| | || || | || | ||| ||||| Sbjct 1755 AGAGTTCTTCCATCTTCGAGTTGTTTACCAGCAAAAATAAGTCTTTATTAATCAGGAGGA 1814 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||| || || ||| || || | | ||| | | ||| | || ||| || Sbjct 1815 ATACCTTCCTTATCTTAAATCTTAGCCTTGACATTTTCAATAGAGTCAGAGGCTTCAACA 1874 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | ||| | ||||| || ||||| || || ||||| |||| ||| Sbjct 1875 TCGAGAGTGATGGTCTTACCAGTCAAAGTCTTAACGAAAATTTACAT 1921 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||||| ||| | ||| ||||| |||| |||||||| ||||| || ||||| || Sbjct 1239 CCTCCTCTTAATCTCAATACTAAGTGAAGAGTAGATTCCTTTTGAATATTGTAGTCAGAA 1298 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || || ||||| |||| ||||||||| | || || | || | ||| ||||| Sbjct 1299 AGAGTTCTTCCATCTTCAAGTTATTTACCAGCGAAAATGAGTCTTTATTAATCAGGAGGA 1358 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||| || || ||| || || | | ||| | | ||| | || ||| || Sbjct 1359 ATACCTTCCTTATCTTAAATCTTAGCCTTGACGTTTTCAATAGAGTCAGAGGCTTCAACA 1418 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || | ||| | || || || ||||||||||| || || |||| |||| Sbjct 1419 TCTAGAGTGATTGTTTTACCAGTCAATGTTTTAACAAAGATTTACATA 1466 >seq81 Length=427612 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || |||| ||| | ||| ||||| |||| |||||||| ||||| |||||||||||| Sbjct 245183 CCACCTCTTAATCTCAAGACTAAGTGAAGGGTAGATTCCTTTTGGATGTTGTAATCGGAA 245242 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || || |||||| ||||| |||||||| |||| || | || | |||||| || Sbjct 245243 AGGGTTCTGCCGTCTTCAAGTTGCTTACCAGCGAAGATAAGTCTTTATTAATCGGGGGGG 245302 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||| || || || || || | | ||| | ||||| | || ||| || Sbjct 245303 ATACCTTCCTTATCTTGGATCTTGGCCTTGACATTTTCAATAGTGTCAGAGGCTTCAACG 245362 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | ||||| || || || || || ||||| |||| ||| Sbjct 245363 TCTAAGGTAATGGTCTTACCAGTTAAAGTCTTAACGAAAATTTACAT 245409 >seq121 Length=281021 Score = 89.7 bits (98), Expect = 5e-13 Identities = 152/218 (70%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 142975 AACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTC 143034 ||||||||||| || ||||||||| || || || || || || || ||||| Sbjct 224657 AACTAAATGAAGGGTTGATTCTTTTGAGATATTATAGTCAGAGATAGTTCTTCCATCTTC 224716 Query 143035 GAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 143094 ||||| ||||||||| | || || | || || ||| ||||| || ||||| || || | Sbjct 224717 AAGTTGCTTACCAGCAAAAATGAGTCTTTACTAATCAGGAGGGATACCTTCCTTATC-TT 224775 Query 143095 AATTTTTTGTTTT-AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCT 143153 | | || ||||| | | ||| | | ||| | | | || || | ||| || |||| Sbjct 224776 ATATCTTAGTTTTGATATTTTCTATAGAGTCTGATGACTAAACATCTAGAGTAACAGTCT 224835 Query 143154 TGCCGGTCAATGTTTTTACGAATATTTGCATAGCTTAT 143191 | || || |||||||| || ||||||| ||||||| || Sbjct 224836 TACCAGTTAATGTTTTAACAAATATTTACATAGCTGAT 224873 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 507012340254000