Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetrahymena_20borealis_20[genbank_20GCA_5F000260095.1_202012-05-01] 325 sequences; 93,506,076 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq81 125 5e-24 seq121 105 5e-18 seq77 100 2e-16 seq105 91.5 1e-13 seq24 87.8 1e-12 >seq81 Length=427612 Score = 125 bits (138), Expect = 5e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 |||||||| ||||| || ||||| |||||||| || || ||||| |||||||||||| Sbjct 245183 CCACCTCTTAATCTCAAGACTAAGTGAAGGGTAGATTCCTTTTGGATGTTGTAATCGGAA 245242 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || |||| ||||||| | ||| || |||||| | || | | || || ||| || Sbjct 245243 AGGGTTCTGCCGTCTTCAAGTTGCTTACCAGCGAAGATAAGTCTTTATTAATCGGGGGGG 245302 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || ||||| || || || ||| ||| ||| |||| || || || ||| || Sbjct 245303 ATACCTTCCTTATCTTGGATCTTGGCCTTGACATTTTCAATAGTGTCAGAGGCTTCAACG 245362 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 |||||||||||||| ||||| || | ||| || || ||||||| ||| Sbjct 245363 TCTAAGGTAATGGTCTTACCAGTTAAAGTCTTAACGAAAATTTACAT 245409 >seq121 Length=281021 Score = 105 bits (116), Expect = 5e-18 Identities = 165/232 (71%), Gaps = 8/232 (3%) Strand=Plus/Plus Query 15136 GCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCT 15195 ||||||||| | ||||| ||||| |||||||| || ||||||| || || || || Sbjct 223677 GCCACCTCTTAGCCTTAACACTAAGTGAAGGGTAGAGTCTTTTTAGATATTATAGTCATA 223736 Query 15196 TAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGG 15255 | | |||| | || |||| || || ||||| | || | | | |||||| || Sbjct 223737 GATAGTTCTTCCATCCTCTAGTTACTTACCAGCAAAAATAAGTCTCTATTGGTCTGGAGG 223796 Query 15256 AATTCCTTCTTTGTCACAAAT-TTTGCTCTTTACAATTTCTATGGTATCG---CTATTTT 15311 ||| |||||||| || |||| ||||| ||| ||| ||||||| || || | ||| Sbjct 223797 AATACCTTCTTTATCTTAAATCTTTGC-CTTAACATTTTCTATTGTTTCTGATCCATTAG 223855 Query 15312 CTACATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 | || | |||||||||||||||||||| |||||| | ||||| || ||| Sbjct 223856 TTTCA---AGGGTAATGGTTTTACCTGTCAAAGTTTTAATAAAAAGTTACAT 223904 >seq77 Length=437778 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 |||||||||||||| | |||||| ||||| || || || ||||| || ||||| ||| Sbjct 1467 CCACCTCTCAATCTAAGAACTAAGTGAAGAGTAGATTCCTTTTGAATATTGTAGTCGGAA 1526 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 ||| |||| | ||||| | || ||| |||||| | || | | || || || ||| Sbjct 1527 AGAGTTCTTCCATCTTCAAGTTATTTACCAGCGAAAATAAGTCTTTATTAATCAGGAGGA 1586 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || ||||| || || |||| || ||| || |||| || | || ||| ||| Sbjct 1587 ATACCTTCCTTATCTTAAATCTTAGCCTTGACGTTTTCAATAGAGTCAGAGGCTTCAACA 1646 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || | |||||||| ||||| |||| ||| || | ||||| | |||| Sbjct 1647 TCGAGAGTAATGGTCTTACCAGTCAAAGTCTTAATGAAAATCTACATA 1694 >seq105 Length=326417 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 |||||||| | |||||| ||||| |||||||| || ||||||| || || || || Sbjct 7567 CCACCTCTTAGTCTTAACACTAAGTGAAGGGTAGATTCTTTTTAGATATTATAGTCAGAG 7626 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | | |||| | ||||| | ||| || || || |||| | | || || || || Sbjct 7627 ATAGTTCTTCCATCTTCAAGTTGCTTTCCTGCAAATATAAGTCTTTATTAATCAGGAGGG 7686 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATC-GCTATTTTCTAC 15315 || ||||| || || ||||| | || ||| |||| |||||||| || || | Sbjct 7687 ATACCTTCCTTATCTTGAATTTAAGTTTTAACATTTTCAATGGTATCAGCGGAATTA-AT 7745 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 ||| | || || || || ||||| ||||||||||||||||| | |||| Sbjct 7746 ATCAAGAGTGATAGTCTTTCCTGTAAGAGTTTTTACAAAAATCTACATA 7794 >seq24 Length=964434 Score = 87.8 bits (96), Expect = 1e-12 Identities = 118/163 (72%), Gaps = 1/163 (1%) Strand=Plus/Minus Query 15207 CGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTT 15266 ||||||| | ||| || |||||| | || | | ||||| ||| || || ||||| | Sbjct 626672 CGTCTTCAAGTTGCTTACCAGCGAAGATAAGTCTTTGTTAATCGGGGGGGATACCTTCCT 626613 Query 15267 TGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAA 15326 |||| || || ||| || |||| || |||||| | ||| || || || |||| Sbjct 626612 TGTCTTGGATCTTAGCCTTGACGTTTTCAATAGTATCGGAAGCTTCAACGTCCAAAGTAA 626553 Query 15327 TGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGA 15369 |||||||||| || || ||||| || ||||||||||| ||||| Sbjct 626552 TGGTTTTACCAGTGAGGGTTTTAACGAAAATTTGCAT-TTTGA 626511 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362177765430825