Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetrahymena_20borealis_20[genbank_20GCA_5F000260095.1_202012-05-01] 325 sequences; 93,506,076 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq28 82.4 7e-11 >seq28 Length=897071 Score = 82.4 bits (90), Expect = 7e-11 Identities = 186/277 (67%), Gaps = 2/277 (1%) Strand=Plus/Minus Query 13420 AATATAAGTATCTATCAATAAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTG 13479 |||||| || || ||||| | | || |||| || || ||||||||||| || |||| Sbjct 62468 AATATAGGTGTCAATCAAAAGGGAGTAAGTTTCAGAGTGGATATTTTCCATGGCAATTTA 62409 Query 13480 GAAACCATAAAAACATCTAGCCTCTGATACCTGAACTTCGGAGTAAAATCTTTCTGCTAA 13539 ||||||||| || | ||| || | | || ||||| | ||| || || | Sbjct 62408 GAAACCATAGAAGGCACGAGCTTCGGGGATTTGGACTTCACACATGAATTACTCGGCGAG 62349 Query 13540 GTTTTCGTTAACTATCCCGTCACTAGCAGCaaaaaaaGCAAGTATGTGCTTAATAAAttt 13599 |||||| || || || ||| |||||| || |||||||| | | ||||| || | Sbjct 62348 GTTTTCAAGGACGATACCATCAGAAGCAGCGAAGAAAGCAAGGACATATTTAATGAAGTG 62289 Query 13600 tttttCGTTTTCTG-ACAACTTTAACCAATCTGGAAAATCTTTTGATAAATCTACCTCCT 13658 |||||| || | | || || |||||| ||||||| ||||||| | || | Sbjct 62288 ACGTTCGTTGTCAGTAAGACGTT-CCCAATCCTTTAAATCTTGATATAAATCAATTTCGT 62230 Query 13659 CAACGGTCCAAAAAGAAGCAACAGCCTTCTTATACAT 13695 || | ||||| |||||||| | | ||||| ||||| Sbjct 62229 CAGCAGTCCAGAAAGAAGCGAGTTCTTTCTTGTACAT 62193 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430980692905650