Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetrahymena_20borealis_20[genbank_20GCA_5F000260095.1_202012-05-01] 325 sequences; 93,506,076 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq105 161 2e-34 seq121 158 3e-33 seq77 158 3e-33 seq81 125 2e-23 seq41 100 7e-16 >seq105 Length=326417 Score = 161 bits (178), Expect = 2e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 104333 CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGAT 104392 || |||||||| || | |||| || | ||||||||||| | |||||||||||||| Sbjct 7567 CCACCTCTTAGTCTTAACACTAAGTGAAGGGTAGATTCTTTTTAGATATTATAGTCAGAG 7626 Query 104393 AGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGT 104452 | |||||| || ||||| ||||| ||||| ||||| || || || | || ||||||||| Sbjct 7627 ATAGTTCTTCCATCTTCAAGTTGCTTTCCTGCAAATATAAGTCTTTATTAATCAGGAGGG 7686 Query 104453 ATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACC 104512 || ||||| ||||| ||||| | | ||| |||||||| | |||||| | | | Sbjct 7687 ATACCTTCCTTATCTTGAATTTAAGTTTTAACATTTTCAATGGTATCAGCGGAATTAATA 7746 Query 104513 TCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || |||||||| || ||||| ||||||||||| |||| ||| Sbjct 7747 TCAAGAGTGATAGTCTTTCCTGTAAGAGTTTTTACAAAAATCTACAT 7793 Score = 158 bits (174), Expect = 3e-33 Identities = 173/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| | ||||| |||| ||| | ||| |||||||| ||| ||||||||| Sbjct 8251 ATACCACCTCTCAATCTAAGAACTAAATGGAGTGTTGATTCTTTAGAAATGTTATAGTCA 8310 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || | |||||| || || || |||| || ||||||||||| || || | || ||||||| Sbjct 8311 GAGATAGTTCTTCCATCATCGAGTTACTTACCAGCAAAAATAAGTCTTTATTAATCAGGA 8370 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| ||||| | ||||| | ||| | |||||||| | || || | Sbjct 8371 GGGATACCTTCCTTATCTTATATCTTAGTTTTAATATTTTCTATAGAGTCTGAAGACTAG 8430 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || ||||| ||||||||||| ||||| | |||||| |||||||| | ||| Sbjct 8431 ACATCTAGAGTAATAGTCTTTCCAGTTAATGTTTTAACAAATATTTACAT 8480 Score = 145 bits (160), Expect = 2e-29 Identities = 158/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 104350 TACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTC 104409 ||||| ||| | || |||||||| | |||||||| ||||| | |||||| || ||||| Sbjct 8043 TACTAAATGGAGAGTTGATTCTTTTTAGATATTATAATCAGAGATAGTTCTTCCATCTTC 8102 Query 104410 TAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTG 104469 ||||| ||||| |||||||| || || | || ||||||||| || ||||| ||||| || Sbjct 8103 AAGTTGCTTTCCTGCAAAAATAAGTCTTTATTAATCAGGAGGGATACCTTCCTTATCTTG 8162 Query 104470 AATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTT 104529 ||| | | ||| |||||||| | ||||| | | | || || || |||||||| Sbjct 8163 AATTTAAGTTTTAACATTTTCAATAGTATCAGCGGAATTAATGTCAAGAGTGATAGTCTT 8222 Query 104530 ACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || ||||| ||||||||||| | || ||| Sbjct 8223 TCCTGTAAGAGTTTTTACAAAAACCTACAT 8252 >seq121 Length=281021 Score = 158 bits (174), Expect = 3e-33 Identities = 175/231 (76%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGA-ATATTATAGTC 104388 || || ||||| | ||||| |||| ||| | || |||||||| ||| ||||||||||| Sbjct 224637 ATACCACCTCTCAATCTAAGAACTAAATGAAGGGTTGATTCTTT-TGAGATATTATAGTC 224695 Query 104389 AGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGG 104448 ||| | |||||| || ||||| ||||| || ||||||||||| || || | | |||||| Sbjct 224696 AGAGATAGTTCTTCCATCTTCAAGTTGCTTACCAGCAAAAATGAGTCTTTACTAATCAGG 224755 Query 104449 AGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTC 104508 ||| || ||||| ||||| | ||||| | ||| | |||||||| | || | | Sbjct 224756 AGGGATACCTTCCTTATCTTATATCTTAGTTTTGATATTTTCTATAGAGTCTGATGACTA 224815 Query 104509 TACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || ||||| |||| |||||||||||| | |||||| |||||||| | ||| Sbjct 224816 AACATCTAGAGTAACAGTCTTACCAGTTAATGTTTTAACAAATATTTACAT 224866 Score = 140 bits (154), Expect = 7e-28 Identities = 127/160 (79%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 104333 CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGAT 104392 || ||||||||||| | |||| || | ||||| ||||| | |||||||||||| | Sbjct 223678 CCACCTCTTAGCCTTAACACTAAGTGAAGGGTAGAGTCTTTTTAGATATTATAGTCATAG 223737 Query 104393 AGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGT 104452 | |||||| || || ||||||| || ||||||||||| || |||| ||| || ||||| Sbjct 223738 ATAGTTCTTCCATCCTCTAGTTACTTACCAGCAAAAATAAGTCTCTATTGGTCTGGAGGA 223797 Query 104453 ATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTA 104492 || ||||||||||| | ||||||||| || |||||||||| Sbjct 223798 ATACCTTCTTTATCTTAAATCTTTGCCTTAACATTTTCTA 223837 Score = 116 bits (128), Expect = 9e-21 Identities = 99/122 (81%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| ||||| ||||| | ||||| ||| | ||||||||||| | |||||||| ||| Sbjct 223903 ATTCCACCTCTAAGCCTCAATACTAAATGGATGGTAGATTCTTTTTAGATATTATAATCA 223962 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 |||| |||||| || |||||||||| || ||||||||||| || || | || ||||||| Sbjct 223963 GATATAGTTCTTCCATCTTCTAGTTACTTACCAGCAAAAATGAGTCTTTATTAATCAGGA 224022 Query 104450 GG 104451 || Sbjct 224023 GG 224024 >seq77 Length=437778 Score = 158 bits (174), Expect = 3e-33 Identities = 173/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||||| || | ||||| || | ||||||||||| |||||||| ||||| Sbjct 1692 ATACCACCTCTTAATCTTAATACTAAGTGAAGAGTAGATTCTTTTTGAATATTGTAGTCG 1751 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || |||||||| || ||||| |||||||| ||||||||||| || || | || ||||||| Sbjct 1752 GAAAGAGTTCTTCCATCTTCGAGTTGTTTACCAGCAAAAATAAGTCTTTATTAATCAGGA 1811 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| ||||| | |||||| || || |||||||| | | || | ||| Sbjct 1812 GGAATACCTTCCTTATCTTAAATCTTAGCCTTGACATTTTCAATAGAGTCAGAGGCTTCA 1871 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || || || ||||||||||| | || || || || || | ||| Sbjct 1872 ACATCGAGAGTGATGGTCTTACCAGTCAAAGTCTTAACGAAAATTTACAT 1921 Score = 145 bits (160), Expect = 2e-29 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| | ||||| |||| || | |||||||| || |||||||| ||||| Sbjct 1464 ATACCACCTCTCAATCTAAGAACTAAGTGAAGAGTAGATTCCTTTTGAATATTGTAGTCG 1523 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || |||||||| || ||||| |||| ||| ||||| ||||| || || | || ||||||| Sbjct 1524 GAAAGAGTTCTTCCATCTTCAAGTTATTTACCAGCGAAAATAAGTCTTTATTAATCAGGA 1583 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| ||||| | |||||| || || || ||||| | | || | ||| Sbjct 1584 GGAATACCTTCCTTATCTTAAATCTTAGCCTTGACGTTTTCAATAGAGTCAGAGGCTTCA 1643 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || ||||| ||||||||||| | || || | || |||| ||| Sbjct 1644 ACATCGAGAGTAATGGTCTTACCAGTCAAAGTCTTAATGAAAATCTACAT 1693 >seq81 Length=427612 Score = 125 bits (138), Expect = 2e-23 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 104333 CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGAT 104392 || ||||||| || | |||| || | |||||||| || || || || || || || Sbjct 245183 CCACCTCTTAATCTCAAGACTAAGTGAAGGGTAGATTCCTTTTGGATGTTGTAATCGGAA 245242 Query 104393 AGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGT 104452 || ||||| |||||||| ||||| || ||||| || || || || | || ||| || || Sbjct 245243 AGGGTTCTGCCGTCTTCAAGTTGCTTACCAGCGAAGATAAGTCTTTATTAATCGGGGGGG 245302 Query 104453 ATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACC 104512 || ||||| ||||| || ||||| || || |||||||| | || || | ||| || Sbjct 245303 ATACCTTCCTTATCTTGGATCTTGGCCTTGACATTTTCAATAGTGTCAGAGGCTTCAACG 245362 Query 104513 TCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTT 104561 |||| ||||| ||||||||||| | || || || || || | ||||| Sbjct 245363 TCTAAGGTAATGGTCTTACCAGTTAAAGTCTTAACGAAAATTTACATTT 245411 Score = 107 bits (118), Expect = 4e-18 Identities = 158/221 (71%), Gaps = 2/221 (1%) Strand=Plus/Plus Query 104333 CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGAT 104392 || ||||||| || | ||| ||| | ||| |||| | | || ||||| ||| Sbjct 227758 CCTCCTCTTAATCTCAATACAAGAAAAACTGTTTATTCCATTTATATGTTATAATCACTA 227817 Query 104393 AGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGT 104452 ||||||||||| ||||| ||||||| || | | || ||||| | || |||||| || Sbjct 227818 AGAGTTCTACCATCTTCGAGTTGTTAACCTATATAGATAAGCCTTTATTAATCAGGTGGA 227877 Query 104453 ATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACC 104512 ||||||| |||||| | |||||||||||||| || || | |||| | ||| | || Sbjct 227878 ATTCCTTATTTATCTTAAATCTTTGCTTTTAGATCCTCGATTGTATTGGTAGAAGCAACA 227937 Query 104513 TCTAGTGTAAT-AGTCTTACCAGTAAGTGTTTTTACAAATA 104552 || | || || | ||| || ||||||||||||| ||||| Sbjct 227938 TCCAAAGTGATGACACTT-CCTGTAAGTGTTTTTATAAATA 227977 >seq41 Length=642683 Score = 100 bits (110), Expect = 7e-16 Identities = 99/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 104333 CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGAT 104392 || ||||||| || | |||| || | || ||||| || ||||||||||||||||| Sbjct 166239 CCACCTCTTAATCTTAAAACTAAGTGAAGAGTTGATTCCTTTTGAATATTATAGTCAGAA 166180 Query 104393 AGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGT 104452 |||||||| || ||||| ||||| || ||||| || || || || |||| |||||| || Sbjct 166179 AGAGTTCTGCCATCTTCAAGTTGCTTACCAGCGAAGATAAGTCTTTGTTAATCAGGGGGA 166120 Query 104453 ATTCCTTC 104460 || ||||| Sbjct 166119 ATACCTTC 166112 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151393605505100