Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetrahymena_20borealis_20[genbank_20GCA_5F000260095.1_202012-05-01] 325 sequences; 93,506,076 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq77 116 3e-21 seq105 96.9 3e-15 seq81 95.1 1e-14 >seq77 Length=437778 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 |||||||| |||| ||| || ||||| | ||||||||||||||| | || || || Sbjct 1239 CCTCCTCTTAATCTCAATACTAAGTGAAGAGTAGATTCCTTTTGAATATTGTAGTCAGAA 1298 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| | ||| || || | ||| || | || || | ||||| | ||| |||||| Sbjct 1299 AGAGTTCTTCCATCTTCAAGTTATTTACCAGCGAAAATGAGTCTTTATTAATCAGGAGGA 1358 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 |||||||| || || ||||| || ||||||||| | | || ||||| | || || Sbjct 1359 ATACCTTCCTTATCTTAAATCTTAGCCTTGACGTTTTCAATAGAGTCAGAGGCTTCAACA 1418 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | ||||| ||||| ||||| | ||||| |||||||| | ||| Sbjct 1419 TCTAGAGTGATTGTTTTACCAGTCAATGTTTTAACAAAGATTTACAT 1465 Score = 109 bits (120), Expect = 5e-19 Identities = 168/240 (70%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 94769 AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACG 94828 ||| | |||| || ||||| |||| || || ||||| | ||||||||| ||||| | Sbjct 1683 AAAATCTACATACCACCTCTTAATCTTAATACTAAGTGAAGAGTAGATTCTTTTTGAATA 1742 Query 94829 TTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGC 94888 || || ||| | ||| | ||| || || ||||| || |||| || | ||||| Sbjct 1743 TTGTAGTCGGAAAGAGTTCTTCCATCTTCGAGTTGTTTACCAGCAAAAATAAGTCTTTAT 1802 Query 94889 TGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCA 94948 | ||| |||||||||||||| || || ||||| || |||||||| | | || |||| Sbjct 1803 TAATCAGGAGGAATACCTTCCTTATCTTAAATCTTAGCCTTGACATTTTCAATAGAGTCA 1862 Query 94949 GCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008 | | || || || | |||||||| || ||||| | ||| || || || || | |||| Sbjct 1863 GAGGCTTCAACATCGAGAGTGATGGTCTTACCAGTCAAAGTCTTAACGAAAATTTACATG 1922 Score = 104 bits (114), Expect = 2e-17 Identities = 164/235 (70%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 94773 TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTAT 94832 |||||| || |||||||||| | || ||||| | ||||||||||||||| | || | Sbjct 1459 TTTACATACCACCTCTCAATCTAAGAACTAAGTGAAGAGTAGATTCCTTTTGAATATTGT 1518 Query 94833 AATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGAT 94892 | ||| | ||| | ||| || || | ||| || | || || | ||||| | || Sbjct 1519 AGTCGGAAAGAGTTCTTCCATCTTCAAGTTATTTACCAGCGAAAATAAGTCTTTATTAAT 1578 Query 94893 CTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGT 94952 | |||||||||||||| || || ||||| || ||||||||| | | || ||||| | Sbjct 1579 CAGGAGGAATACCTTCCTTATCTTAAATCTTAGCCTTGACGTTTTCAATAGAGTCAGAGG 1638 Query 94953 GGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || | || ||||| || ||||| | ||| || | || |||| ||| Sbjct 1639 CTTCAACATCGAGAGTAATGGTCTTACCAGTCAAAGTCTTAATGAAAATCTACAT 1693 >seq105 Length=326417 Score = 96.9 bits (106), Expect = 3e-15 Identities = 164/238 (69%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 94770 AATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGT 94829 ||||||| | || ||||| | || ||||| ||||| | |||||||| |||| | | Sbjct 7556 AATTTTAACCACCACCTCTTAGTCTTAACACTAAGTGAAGGGTAGATTCTTTTTAGATAT 7615 Query 94830 TATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCT 94889 |||| || ||||| | ||| || || || ||||| |||| || | ||||| | Sbjct 7616 TATAGTCAGAGATAGTTCTTCCATCTTCAAGTTGCTTTCCTGCAAATATAAGTCTTTATT 7675 Query 94890 GATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAG 94949 ||| ||||| |||||||| || || | ||||| | || || | | || |||| Sbjct 7676 AATCAGGAGGGATACCTTCCTTATCTTGAATTTAAGTTTTAACATTTTCAATGGTATCAG 7735 Query 94950 CGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | | |||| ||||| || ||||| ||||||||||| ||||| |||| ||| Sbjct 7736 CGGAATTAATATCAAGAGTGATAGTCTTTCCTGTAAGAGTTTTTACAAAAATCTACAT 7793 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 94795 CAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATC 94854 ||| || || || | ||| ||||| |||| | |||||||| ||||| | ||| Sbjct 8040 CAATACTAAATGGAGAGTTGATTCTTTTTAGATATTATAATCAGAGATAGTTCTTCCATC 8099 Query 94855 CTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTC 94914 || || || ||||| |||| || | ||||| | ||| ||||| |||||||| || || Sbjct 8100 TTCAAGTTGCTTTCCTGCAAAAATAAGTCTTTATTAATCAGGAGGGATACCTTCCTTATC 8159 Query 94915 ATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGT 94974 | ||||| | || || | | ||| |||||| | | ||||| ||||| || Sbjct 8160 TTGAATTTAAGTTTTAACATTTTCAATAGTATCAGCGGAATTAATGTCAAGAGTGATAGT 8219 Query 94975 TTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| ||||||||||| ||||| | || ||| Sbjct 8220 CTTTCCTGTAAGAGTTTTTACAAAAACCTACAT 8252 >seq81 Length=427612 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || ||||| |||| ||| || ||||| | |||||||||||||| | ||| |||||| Sbjct 245183 CCACCTCTTAATCTCAAGACTAAGTGAAGGGTAGATTCCTTTTGGATGTTGTAATCGGAA 245242 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | || || || || || || || || | ||||| | ||||| | ||| || || Sbjct 245243 AGGGTTCTGCCGTCTTCAAGTTGCTTACCAGCGAAGATAAGTCTTTATTAATCGGGGGGG 245302 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 |||||||| || || | || || |||||||| | | |||||||| | || ||| Sbjct 245303 ATACCTTCCTTATCTTGGATCTTGGCCTTGACATTTTCAATAGTGTCAGAGGCTTCAACG 245362 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | || ||||| || ||||| | ||| || || || || | ||| Sbjct 245363 TCTAAGGTAATGGTCTTACCAGTTAAAGTCTTAACGAAAATTTACAT 245409 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448289378817000