Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetrahymena_20borealis_20[genbank_20GCA_5F000260095.1_202012-05-01] 325 sequences; 93,506,076 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq2 224 1e-53 >seq2 Length=2195051 Score = 224 bits (248), Expect = 1e-53 Identities = 493/739 (67%), Gaps = 0/739 (0%) Strand=Plus/Minus Query 63104 TCTCCTTTCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTC 63163 ||| | ||| |||| ||| ||||| | ||| || || || |||||||||| Sbjct 428883 TCTACCTTCATTTTCATATTTAGTATAAAGAGCTTCAAATTCATCACCCCAAACATCAGG 428824 Query 63164 CAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTT 63223 | |||||| ||||||| |||||||| | | ||| | ||| ||| | | |||| || Sbjct 428823 AAGTCCAGGGCATTCATTAGGACACATAAGAGTCCATTTTCCATCAGCAATGACTCTCTT 428764 Query 63224 CATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTT 63283 ||| || ||||| ||||||||||| || | |||| |||||| | ||| | ||| || || Sbjct 428763 CATGAAAAGATCGGGAATCCAAAGTGCAAAGAATAAATCTCTAGCTCTTTATTCTTCCTT 428704 Query 63284 TCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTA 63343 || |||||| || | | ||||| | | || |||||||||||| ||||| ||||| Sbjct 428703 ACCGTGATTCTTCTTCAACTAAAGGAAGTCGAAAACATCAGAATGCCAAGGTTCTAAGTA 428644 Query 63344 TATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATT 63403 | ||| | || | ||| || || ||||| | |||||||| || | ||| Sbjct 428643 AACGGCAAAGGAACCCTTTCTCTTGCCACCACCTTGATCAACATATCTAGCAGTATCATT 428584 Query 63404 ATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCT 63463 | || | | ||| |||| || || || || |||||||| ||||| ||||| || Sbjct 428583 GAAGACACGGAGCATAGGAACAAGTCCATTAGAAATACCATTTGTACCTCTAATATAACT 428524 Query 63464 TCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAA 63523 | || || | |||||| || || ||||| || || ||||| | ||||||||||| Sbjct 428523 ATCTCTAGCTCTGATATTATGAACGGAAAGACCAATACCACCTGCACTCTTAGAGATTAA 428464 Query 63524 TGCGCATCGTTTTAACGTGTCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAG 63583 || ||| | || | |||||||| ||||| |||||| ||| | ||| | ||||| Sbjct 428463 AGCACATTGCTTAAGAGTGTCATAAATACCGTCTATGGAATCTGCTTACATTTGAAGTAA 428404 Query 63584 AAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTG 63643 ||||| ||| ||||| | | ||| || | ||| || | ||||||| ||| || Sbjct 428403 GAAACAACTACTCATTTAGGGCTTGGGAGTACCTGAATTGAAAAGAGTAGGAGTAGCATG 428344 Query 63644 CGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTG 63703 || ||||| |||||| | || ||| || || | || || | ||| | | Sbjct 428343 AGTGAACCACTTTTCACTCATTAAATTATAAGTACGGAAGGCACTTTCCAAATCTCTCTT 428284 Query 63704 ATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTT 63763 |||||| || | | || | ||||||||| | |||||||||||| | || || || Sbjct 428283 ATGAATACCAATAGAAACTCTCATTAACATTTATTGAGGTCTTTCAGCAATTTTACCATT 428224 Query 63764 TATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTC 63823 | ||| || | || ||| | ||| || |||||||| | | || | | | || Sbjct 428223 CAATTTTAAAAGATAACTACGTTCGAGAGTCTTGAAACCAAAGAAATCATAAGTATAATC 428164 Query 63824 TCGTTCGTAAATAATAACC 63842 || || ||| |||||||| Sbjct 428163 TCTATCATAATTAATAACC 428145 Score = 93.3 bits (102), Expect = 5e-14 Identities = 81/101 (80%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 62705 AATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGA 62764 |||||| || || || | |||| |||||||||||| |||||||||||||| |||| || Sbjct 429426 AATAAAGGCATCAGCAAGACCTTAAACACCAATACCAATAGGTCTATGTCTAATATTTGA 429367 Query 62765 GATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAA 62805 ||| ||||||||||| ||| |||||||| ||| |||| Sbjct 429366 CTTTTTAGCTTCTGGAACAGGGTAATAATTTTCATCAATAA 429326 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622944669277000