Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetrahymena_20borealis_20[genbank_20GCA_5F000260095.1_202012-05-01] 325 sequences; 93,506,076 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq77 113 4e-20 seq105 107 2e-18 seq121 95.1 1e-14 >seq77 Length=437778 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||| || | || || || || || ||||| || | || || |||| || || ||| Sbjct 1921 ATGTAAATTTTCGTTAAGACTTTGACTGGTAAGACCATCACTCTCGATGTTGAAGCCTCT 1862 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||| | || || | ||||| |||||| || || ||||| || ||||| ||| || Sbjct 1861 GACTCTATTGAAAATGTCAAGGCTAAGATTTAAGATAAGGAAGGTATTCCTCCTGATTAA 1802 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 | ||||| |||| | || || ||||||||||||| |||| | ||| || || Sbjct 1801 TAAAGACTTATTTTTGCTGGTAAACAACTCGAAGATGGAAGAACTCTTTCCGACTACAAT 1742 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 ||||||||||||||||| |||| ||||| |||||||| ||||| || Sbjct 1741 ATTCAAAAAGAATCTACTCTTCACTTAGTATTAAGATTAAGAGGTGG 1695 Score = 98.7 bits (108), Expect = 9e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24006 AAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAACGACACCATCGAGCAA 24065 || || || ||||| || | ||||| |||| || || ||| ||| | || || | Sbjct 1678 AAGACTTTGACTGGTAAGACCATTACTCTCGATGTTGAAGCCTCTGACTCTATTGAAAAC 1619 Query 24066 GTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTAC 24125 ||||| |||||| || || ||||| || ||||| ||| || | ||||| |||| | Sbjct 1618 GTCAAGGCTAAGATTTAAGATAAGGAAGGTATTCCTCCTGATTAATAAAGACTTATTTTC 1559 Query 24126 GGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAACATTCAAAAAGAATCT 24185 | || || |||| ||||||| |||| | ||| || || |||||||| |||||| Sbjct 1558 GCTGGTAAATAACTTGAAGATGGAAGAACTCTTTCCGACTACAATATTCAAAAGGAATCT 1499 Query 24186 ACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 || |||| ||||| | ||||||||||| || Sbjct 1498 ACTCTTCACTTAGTTCTTAGATTGAGAGGTGG 1467 >seq105 Length=326417 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||| || | ||||| ||||||||||||||||| | ||||| | || ||| || | Sbjct 8480 ATGTAAATATTTGTTAAAACATTAACTGGAAAGACTATTACTCTAGATGTCTAGTCTTCA 8421 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||| | || || | | ||| ||||| || || ||||| || ||||| ||| || Sbjct 8420 GACTCTATAGAAAATATTAAAACTAAGATATAAGATAAGGAAGGTATCCCTCCTGATTAA 8361 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 | ||||| |||| | || ||| ||||||| |||| |||| || || |||||| Sbjct 8360 TAAAGACTTATTTTTGCTGGTAAGTAACTCGATGATGGAAGAACTATCTCTGACTATAAC 8301 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 ||| |||||||| ||| | |||||||| | ||||||||||| || Sbjct 8300 ATTTCTAAAGAATCAACACTCCATTTAGTTCTTAGATTGAGAGGTGG 8254 Score = 89.7 bits (98), Expect = 4e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 24084 GACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAA 24143 || || ||||| || ||||| ||| || | ||||| || | | || |||||||| ||| Sbjct 7700 GATAAGGAAGGTATCCCTCCTGATTAATAAAGACTTATATTTGCAGGAAAGCAACTTGAA 7641 Query 24144 GATGACAGAAACGTCAGCGATTATAACATTCAAAAAGAATCTACAATTCATTTAGTGTTA 24203 |||| |||| || || ||||| || ||||||||||||| |||| ||||||||| Sbjct 7640 GATGGAAGAACTATCTCTGACTATAATATCTAAAAAGAATCTACCCTTCACTTAGTGTTA 7581 Query 24204 AGATTGAGAGGAGG 24217 ||| | ||||| || Sbjct 7580 AGACTAAGAGGTGG 7567 >seq121 Length=281021 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||| || | ||||| |||||||||||||| || | |||| | || || || | Sbjct 224866 ATGTAAATATTTGTTAAAACATTAACTGGTAAGACTGTTACTCTAGATGTTTAGTCATCA 224807 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||| | || || | ||||| ||||| || || ||||| || ||||| ||| | Sbjct 224806 GACTCTATAGAAAATATCAAAACTAAGATATAAGATAAGGAAGGTATCCCTCCTGATTAG 224747 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 | ||||| |||| | || |||||||| ||||||| |||| || || ||||| Sbjct 224746 TAAAGACTCATTTTTGCTGGTAAGCAACTTGAAGATGGAAGAACTATCTCTGACTATAAT 224687 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 || ||||||||| || |||||||||| | ||||||||||| || Sbjct 224686 ATCTCAAAAGAATCAACCCTTCATTTAGTTCTTAGATTGAGAGGTGG 224640 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 |||| || | ||| | ||||| || || || ||| | |||||| | ||| | | Sbjct 223905 AATGTAACTTTTTATTAAAACTTTGACAGGTAAAACCATTACCCTTGAAACTAATGGATC 223846 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 || || || || | || || ||||||| || |||||||| || ||||| || || Sbjct 223845 AGAAACAATAGAAAATGTTAAGGCAAAGATTTAAGATAAAGAAGGTATTCCTCCAGACCA 223786 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 | ||||||| |||| | || ||| |||| || |||| |||| || || ||||| Sbjct 223785 ATAGAGACTTATTTTTGCTGGTAAGTAACTAGAGGATGGAAGAACTATCTATGACTATAA 223726 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 || ||||||| ||||| |||| ||||||||||| | ||||| || Sbjct 223725 TATCTAAAAAGACTCTACCCTTCACTTAGTGTTAAGGCTAAGAGGTGG 223678 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429934297050375