Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetrahymena_20borealis_20[genbank_20GCA_5F000260095.1_202012-05-01] 325 sequences; 93,506,076 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq105 87.8 2e-12 seq77 86.0 5e-12 >seq105 Length=326417 Score = 87.8 bits (96), Expect = 2e-12 Identities = 143/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 115293 TTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGCGACACTG 115352 ||||||| ||||| || || ||||| || || || | || | | ||| || ||| Sbjct 8245 TTTTTGTAAAAACTCTTACAGGAAAGACTATCACTCTTGACATTAATTCCGCTGATACTA 8186 Query 115353 TTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAGCAAAGAC 115412 ||| | | || ||| ||||| ||||| ||||| |||| |||| | |||||| Sbjct 8185 TTGAAAATGTTAAAACTTAAATTCAAGATAAGGAAGGTATCCCTCCTGATTAATAAAGAC 8126 Query 115413 TTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAACATTCAAA 115472 |||||| ||| || || ||| | ||||||| | ||| || | |||||||| || ||| Sbjct 8125 TTATTTTTGCAGGAAAGCAACTTGAAGATGGAAGAACTATCTCTGATTATAATATCTAAA 8066 Query 115473 AAGAGTCTACTATACATATGGTGTTG 115498 |||| || ||| | ||| | || ||| Sbjct 8065 AAGAATCAACTCTCCATTTAGTATTG 8040 >seq77 Length=437778 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||| ||||||| || || || | || || || ||||| || |||| || || Sbjct 1921 ATGTAAATTTTCGTTAAGACTTTGACTGGTAAGACCATCACTCTCGATGTTGAAGCCTCT 1862 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 ||| || ||| | | || || || ||| ||||| ||||| | || |||| | Sbjct 1861 GACTCTATTGAAAATGTCAAGGCTAAGATTTAAGATAAGGAAGGTATTCCTCCTGATTAA 1802 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 |||||||||||| ||| || |||||| | ||||||| | ||| | |||| || || Sbjct 1801 TAAAGACTTATTTTTGCTGGTAAACAACTCGAAGATGGAAGAACTCTTTCCGACTACAAT 1742 Query 115466 ATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 ||||||||||| |||||| | || | || || ||||| |||| || Sbjct 1741 ATTCAAAAAGAATCTACTCTTCACTTAGTATTAAGATTAAGAGGTGG 1695 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425342315239000