Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetrahymena_20borealis_20[genbank_20GCA_5F000260095.1_202012-05-01] 325 sequences; 93,506,076 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq2 219 5e-52 seq28 149 8e-31 >seq2 Length=2195051 Score = 219 bits (242), Expect = 5e-52 Identities = 472/706 (67%), Gaps = 0/706 (0%) Strand=Plus/Minus Query 62992 TTCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCGGACACATCAACGA 63051 ||| || || || |||||||||| |||||||| ||||||| |||||||| | | Sbjct 428850 TTCAAATTCATCACCCCAAACATCAGGAAGTCCAGGGCATTCATTAGGACACATAAGAGT 428791 Query 63052 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAA 63111 ||| | ||| ||| | | |||| ||||| || ||||| ||||||||||| || | || Sbjct 428790 CCATTTTCCATCAGCAATGACTCTCTTCATGAAAAGATCGGGAATCCAAAGTGCAAAGAA 428731 Query 63112 TAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 63171 || |||||| | ||| | ||| || || || |||||| || | | ||||| | | Sbjct 428730 TAAATCTCTAGCTCTTTATTCTTCCTTACCGTGATTCTTCTTCAACTAAAGGAAGTCGAA 428671 Query 63172 AATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCC 63231 || |||||||||||| ||||| ||||| | ||| | || | ||| || || Sbjct 428670 AACATCAGAATGCCAAGGTTCTAAGTAAACGGCAAAGGAACCCTTTCTCTTGCCACCACC 428611 Query 63232 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGA 63291 ||||| | |||||||| || | ||| | || | | ||| |||| || ||||| || Sbjct 428610 TTGATCAACATATCTAGCAGTATCATTGAAGACACGGAGCATAGGAACAAGTCCATTAGA 428551 Query 63292 TGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACC 63351 ||||||| || ||| ||||| || | || || | |||||| || || ||||| Sbjct 428550 AATACCATTTGTACCTCTAATATAACTATCTCTAGCTCTGATATTATGAACGGAAAGACC 428491 Query 63352 TATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTC 63411 || || ||||| | ||||||||||| || ||| | || | || ||||| || || || Sbjct 428490 AATACCACCTGCACTCTTAGAGATTAAAGCACATTGCTTAAGAGTGTCATAAATACCGTC 428431 Query 63412 TATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCC 63471 ||| ||| | ||| | ||||| ||||| ||| ||||| | | ||| || Sbjct 428430 TATGGAATCTGCTTACATTTGAAGTAAGAAACAACTACTCATTTAGGGCTTGGGAGTACC 428371 Query 63472 CGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTGTACGT 63531 | ||| || | ||||||| ||| ||||| ||||| |||||| | || ||| || || Sbjct 428370 TGAATTGAAAAGAGTAGGAGTAGCATGAGTGAACCACTTTTCACTCATTAAATTATAAGT 428311 Query 63532 CTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTG 63591 | || || | ||| | | |||||| || | | || | ||||||||| | Sbjct 428310 ACGGAAGGCACTTTCCAAATCTCTCTTATGAATACCAATAGAAACTCTCATTAACATTTA 428251 Query 63592 CTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTT 63651 |||||||||||| | || || || | ||| || | || ||| | ||| || Sbjct 428250 TTGAGGTCTTTCAGCAATTTTACCATTCAATTTTAAAAGATAACTACGTTCGAGAGTCTT 428191 Query 63652 AAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACC 63697 |||||||| | | || | | | |||| || ||| |||||||| Sbjct 428190 GAAACCAAAGAAATCATAAGTATAATCTCTATCATAATTAATAACC 428145 Score = 93.3 bits (102), Expect = 5e-14 Identities = 81/101 (80%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 62560 AATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGA 62619 |||||| || || || | |||| |||||||||||| |||||||||||||| |||| || Sbjct 429426 AATAAAGGCATCAGCAAGACCTTAAACACCAATACCAATAGGTCTATGTCTAATATTTGA 429367 Query 62620 GATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAA 62660 ||| ||||||||||| ||| |||||||| ||| |||| Sbjct 429366 CTTTTTAGCTTCTGGAACAGGGTAATAATTTTCATCAATAA 429326 >seq28 Length=897071 Score = 149 bits (164), Expect = 8e-31 Identities = 494/754 (66%), Gaps = 32/754 (4%) Strand=Plus/Minus Query 32534 ATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGAC 32593 ||||||||| ||||||| || || ||||| | | | ||||| | ||||||| ||| Sbjct 62861 ATTCATTCCAATAAGTTCGACGGGGAGAGCTTCTGAGATGAATTCCTTTTCAATATCGAC 62802 Query 32594 CGCGTCTGTTATAATAGATCTTACTG-TTTCTTCACTCGGTGGATACAATAAATGTTTAA 32652 || || | ||||| ||| | |||||||| | |||| | | || ||||| Sbjct 62801 AGCTTCAATGATAATG----TTATAGATTTCTTCATT-GGTGAGTTTATTA----TTTAA 62751 Query 32653 --------ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTC 32704 | | ||||| |||||||| ||| || || || |||||| ||| | ||| Sbjct 62750 CATGGAGTATAATAAACAAGCGAAATCAGTGTGGAGGCCTTCATCTCTAGAAATGAGTTC 62691 Query 32705 GTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGG-ACGCAA 32763 ||||| || || | |||||||||| |||||| |||||||| || |||| || || Sbjct 62690 ATTGGAGAAGGTCAAACCGGGCATTAAAGAACGCTTCTTAAGCCAGAAGATGGCACAGAA 62631 Query 32764 ATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAAC 32823 | | ||| ||||| || ||||| | || ||||| ||||| ||||| || | Sbjct 62630 ACTA-CCACTGAAGAATATACCTTCGATGGCAGCAAAAGCAATGAGTCTGGAAGCAAAGT 62572 Query 32824 CGGCGCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTAC-ACAAGG-CAT 32881 || ||| || |||||||| ||||||| | |||||||| || | ||| || ||| Sbjct 62571 TATCGTTGTTATTGATCCACTTAAGAGCCCATTGAGCCTTCTTGTTAATGACAGGGACAT 62512 Query 32882 TGTCTCTATAG-CATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAA 32940 | | | || | || || || | | |||||| | ||| |||| ||| || |||| Sbjct 62511 TTTG---AGAGGCCTTGAAAAGGAATTCCTTTTCAGTTTCATCCTTAATATAGGTGTCAA 62455 Query 32941 TCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGC 33000 ||||||| || |||| || || || ||||| ||||| |||| || || |||||| Sbjct 62454 TCAAAAGGGAGTAAGTTTCAGAGTGGATATTTTCCATGGCAATTTAGAAACCATAGAAGG 62395 Query 33001 ATCTAGCCTCGGTAATCTGTACTTCTGTACA-AAATCGTTCTGCTAAATTTTCATTCACT 33059 | ||| |||| || || ||||| ||| ||| || || | |||||| || Sbjct 62394 CACGAGCTTCGGGGATTTGGACTTC-ACACATGAATTACTCGGCGAGGTTTTCAAGGACG 62336 Query 33060 ATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGT 33119 || || ||| || || || || || | |||| ||| || || | ||||| Sbjct 62335 ATACCATCAGAAGCAGCGAAGAAAGCAAGGACATATTTAATGAAGTGACGTTCGTTGTCA 62276 Query 33120 GTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAAT 33179 || || | |||||| || | ||||| | ||| ||| | ||| || | ||||| || Sbjct 62275 GTAAGACGTTCCCAATCCTTTAAATCTTGATATAAATCAATTTCGTCAGCAGTCCAGAAA 62216 Query 33180 GATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACA 33239 || || | | || || ||||| | ||||| | | |||| ||| || || | ||| Sbjct 62215 GAAGCGAGTTCTTTCTTGTACATTTCCCAGACCTTGTTGTATTTAATGGGGAAGAGGACA 62156 Query 33240 AATCTATTTGGATTTT--TTGCAAGGATTGGTTC 33271 || | || || |||| ||| ||||| ||||| Sbjct 62155 AAACGGTTAGGGTTTTCCTTG--AGGATAGGTTC 62124 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633629425870000