Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetrahymena_20borealis_20[genbank_20GCA_5F000260095.1_202012-05-01] 325 sequences; 93,506,076 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq77 127 2e-24 seq121 93.3 4e-14 >seq77 Length=437778 Score = 127 bits (140), Expect = 2e-24 Identities = 168/231 (73%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||| |||| || || ||||||||||| ||||| ||||||| |||| || || | ||| Sbjct 1921 ATGTAAATTTTCGTTAAGACTTTGACTGGTAAGACCATCACTCTCGATGTTGAAGCCTCT 1862 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||| |||| || |||| | || || | | | || || ||||| ||||| ||||| Sbjct 1861 GACTCTATTGAAAATGTCA---AGGCTAAGATTTAA-GATAAGGAAGGTATTCCTCCTGA 1806 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 || | | |||||||||| || |||||| | ||||||| | ||| | ||| || Sbjct 1805 TTAATAAAGACTTATTTTTGCTGGTAAACAACTCGAAGATGGAAGAACTCTTTCCGACTA 1746 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 |||||||||||||||||| || || || ||||| |||| ||||||| || Sbjct 1745 CAATATTCAAAAAGAATCTACTCTTCACTTAGTATTAAGATTAAGAGGTGG 1695 Score = 95.1 bits (104), Expect = 1e-14 Identities = 161/231 (70%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||| |||| ||||| || || ||||| |||||| | ||||| | || || || | ||| Sbjct 1465 ATGTAAATCTTTGTTAAAACATTGACTGGTAAAACAATCACTCTAGATGTTGAAGCCTCT 1406 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||| |||| || |||| | || || | | | || || ||||| ||||| ||||| Sbjct 1405 GACTCTATTGAAAACGTCA---AGGCTAAGATTTAA-GATAAGGAAGGTATTCCTCCTGA 1350 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 || | | | ||||| || || ||| || | ||||||| | ||| | || || Sbjct 1349 TTAATAAAGACTCATTTTCGCTGGTAAATAACTTGAAGATGGAAGAACTCTTTCTGACTA 1290 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 |||||||||||| ||||| || || || ||||| | || |||||||||| Sbjct 1289 CAATATTCAAAAGGAATCTACTCTTCACTTAGTATTGAGATTAAGAGGAGG 1239 Score = 95.1 bits (104), Expect = 1e-14 Identities = 152/216 (70%), Gaps = 8/216 (4%) Strand=Plus/Minus Query 25014 AAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATCGA---- 25069 ||||||||||| ||||| |||| || |||| || || | |||||| |||| || Sbjct 1678 AAGACTTTGACTGGTAAGACCATTACTCTCGATGTTGAAGCCTCTGACTCTATTGAAAAC 1619 Query 25070 GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTAT 25129 |||| | || || | | | || || ||||| ||||| ||||| || | | |||| Sbjct 1618 GTCA---AGGCTAAGATTTAA-GATAAGGAAGGTATTCCTCCTGATTAATAAAGACTTAT 1563 Query 25130 TTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAAAGA 25189 ||| || || ||| || | ||||||| | ||| | ||| |||||||||||||| || Sbjct 1562 TTTCGCTGGTAAATAACTTGAAGATGGAAGAACTCTTTCCGACTACAATATTCAAAAGGA 1503 Query 25190 ATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||| || || || ||||| || || | ||||| || Sbjct 1502 ATCTACTCTTCACTTAGTTCTTAGATTGAGAGGTGG 1467 >seq121 Length=281021 Score = 93.3 bits (102), Expect = 4e-14 Identities = 160/232 (69%), Gaps = 8/232 (3%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAG----TGGAGT 25053 |||| || | ||| | || |||||||| |||||| |||| || | ||| |||| Sbjct 223905 AATGTAACTTTTTATTAAAACTTTGACAGGTAAAACCATTACCCTTGAAACTAATGGA-- 223848 Query 25054 CGTCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTG 25113 || || || || || | ||| ||| || || |||||||| ||||| || | Sbjct 223847 --TCAGAAACAATAGAAAATGTTAAGGCAAAGATTTAAGATAAAGAAGGTATTCCTCCAG 223790 Query 25114 ACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATT 25173 ||||| || | |||||||||| || || || |||| |||| | ||| | || | Sbjct 223789 ACCAATAGAGACTTATTTTTGCTGGTAAGTAACTAGAGGATGGAAGAACTATCTATGACT 223730 Query 25174 ACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 | ||||| ||||||| || || || || |||||| ||||||||||||| || Sbjct 223729 ATAATATCTAAAAAGACTCTACCCTTCACTTAGTGTTAAGGCTAAGAGGTGG 223678 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433326283614875