Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetrahymena_20borealis_20[genbank_20GCA_5F000260095.1_202012-05-01] 325 sequences; 93,506,076 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq81 118 9e-22 seq77 118 9e-22 seq105 104 2e-17 seq121 91.5 1e-13 seq24 89.7 4e-13 seq135 84.2 2e-11 >seq81 Length=427612 Score = 118 bits (130), Expect = 9e-22 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||| ||||||| ||||| |||||||| ||||| || | || | || || ||| || | Sbjct 245409 ATGTAAATTTTCGTTAAGACTTTAACTGGTAAGACCATTACCTTAGACGTTGAAGCCTCT 245350 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || |||| || || ||||| ||||| ||||| || |||||| || Sbjct 245349 GACACTATTGAAAATGTCAAGGCCAAGATCCAAGATAAGGAAGGTATCCCCCCCGATTAA 245290 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | ||||| || || || || || | || || | | ||| | |||||||||||| Sbjct 245289 TAAAGACTTATCTTCGCTGGTAAGCAACTTGAAGACGGCAGAACCCTTTCCGATTACAAC 245230 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATT 22436 || ||||| ||||| ||| | || ||||| ||| |||| Sbjct 245229 ATCCAAAAGGAATCTACCCTTCACTTAGTCTTGAGATT 245192 >seq77 Length=437778 Score = 118 bits (130), Expect = 9e-22 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||| ||||||| ||||| ||||| || ||||| || ||||||| || || ||| || | Sbjct 1921 ATGTAAATTTTCGTTAAGACTTTGACTGGTAAGACCATCACTCTCGATGTTGAAGCCTCT 1862 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || | | || || |||| || ||| |||| ||||| |||||||| || ||| || Sbjct 1861 GACTCTATTGAAAATGTCAAGGCTAAGATTTAAGATAAGGAAGGTATTCCTCCTGATTAA 1802 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | ||||| ||||| || ||||| | || ||| | || | ||||| ||||| Sbjct 1801 TAAAGACTTATTTTTGCTGGTAAACAACTCGAAGATGGAAGAACTCTTTCCGACTACAAT 1742 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATT 22436 |||||||||||||| || | || ||||| || |||| Sbjct 1741 ATTCAAAAAGAATCTACTCTTCACTTAGTATTAAGATT 1704 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||| |||| ||||||||||| || || |||||||| ||||||| || || ||| || | Sbjct 1465 ATGTAAATCTTTGTTAAAACATTGACTGGTAAAACAATCACTCTAGATGTTGAAGCCTCT 1406 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || | | || | |||| || ||| |||| ||||| |||||||| || ||| || Sbjct 1405 GACTCTATTGAAAACGTCAAGGCTAAGATTTAAGATAAGGAAGGTATTCCTCCTGATTAA 1346 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | || || || || || ||| | | || ||| | || | || || ||||| Sbjct 1345 TAAAGACTCATTTTCGCTGGTAAATAACTTGAAGATGGAAGAACTCTTTCTGACTACAAT 1286 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGTT 22447 |||||||| ||||| || | || ||||| ||| |||| | ||||||| Sbjct 1285 ATTCAAAAGGAATCTACTCTTCACTTAGTATTGAGATTAAGAGGAGGTT 1237 >seq105 Length=326417 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||| | |||||||| |||||| | || || || || |||||||||| | | || | Sbjct 7793 ATGTAGATTTTTGTAAAAACTCTTACAGGAAAGACTATCACTCTTGATATTAATTCCGCT 7734 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || || | ||| |||||||||| ||||| ||||| || || ||| || Sbjct 7733 GATACCATTGAAAATGTTAAAACTTAAATTCAAGATAAGGAAGGTATCCCTCCTGATTAA 7674 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | ||||||||||| || || || | || ||| | || |||| || || || Sbjct 7673 TAAAGACTTATATTTGCAGGAAAGCAACTTGAAGATGGAAGAACTATCTCTGACTATAAT 7614 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTT 22430 || |||||||||| ||| | || ||||| || Sbjct 7613 ATCTAAAAAGAATCTACCCTTCACTTAGTGTT 7582 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||| |||| ||||||||||| ||||| || || || | ||||| || || | | | Sbjct 8480 ATGTAAATATTTGTTAAAACATTAACTGGAAAGACTATTACTCTAGATGTCTAGTCTTCA 8421 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || | | || |||| ||| || || |||| ||||| ||||| || || ||| || Sbjct 8420 GACTCTATAGAAAATATTAAAACTAAGATATAAGATAAGGAAGGTATCCCTCCTGATTAA 8361 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | ||||| ||||| || || | | || ||| | || |||| || || ||| Sbjct 8360 TAAAGACTTATTTTTGCTGGTAAGTAACTCGATGATGGAAGAACTATCTCTGACTATAAC 8301 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||| |||||||| || | ||||||||| | ||||| | || ||| Sbjct 8300 ATTTCTAAAGAATCAACACTCCATTTAGTTCTTAGATTGAGAGGTGGT 8253 >seq121 Length=281021 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||| |||| ||||||||||| ||||| ||||| || || ||||| || || | | | Sbjct 224866 ATGTAAATATTTGTTAAAACATTAACTGGTAAGACTGTTACTCTAGATGTTTAGTCATCA 224807 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || | | || |||||||| || || |||| ||||| ||||| || || ||| | Sbjct 224806 GACTCTATAGAAAATATCAAAACTAAGATATAAGATAAGGAAGGTATCCCTCCTGATTAG 224747 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | || || ||||| || || || | || ||| | || |||| || || || Sbjct 224746 TAAAGACTCATTTTTGCTGGTAAGCAACTTGAAGATGGAAGAACTATCTCTGACTATAAT 224687 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || ||||||||| ||| | ||||||||| | ||||| | || ||| Sbjct 224686 ATCTCAAAAGAATCAACCCTTCATTTAGTTCTTAGATTGAGAGGTGGT 224639 >seq24 Length=964434 Score = 89.7 bits (98), Expect = 4e-13 Identities = 109/149 (73%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 || ||||||||||| |||||||| | || |||||||| | ||| | || || ||| | Sbjct 626513 AAAATGCAAATTTTCGTTAAAACCCTCACTGGTAAAACCATTACTTTGGACGTTGAAGCT 626572 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 ||||||| | || | |||| || || ||||||||||| ||||| || |||||| Sbjct 626573 TCCGATACTATTGAAAACGTCAAGGCTAAGATCCAAGACAAGGAAGGTATCCCCCCCGAT 626632 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACA 22364 ||||| | ||||| || || || || || Sbjct 626633 TAACAAAGACTTATCTTCGCTGGTAAGCA 626661 >seq135 Length=235529 Score = 84.2 bits (92), Expect = 2e-11 Identities = 102/139 (73%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 22309 CAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTA 22368 ||||||||||| |||||||| ||||||||| || | ||||| ||||| || || | | Sbjct 235527 CAAGACAAGGAAGGTATTCCCCCCGATCAATAAAGACTTATCTTTGCTGGTAAGTAACTT 235468 Query 22369 GAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACATTTAGTT 22428 || ||| | ||| | || || ||||| ||| |||| ||||| || | || |||||| Sbjct 235467 GAAGATGGAAGAACCCTTTCTGACTACAATATTTAAAAGGAATCAACTCTCCACTTAGTT 235408 Query 22429 TTGCGATTGCGCGGAGGTT 22447 || |||| | || |||| Sbjct 235407 TTAAGATTAAGAGGTGGTT 235389 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419726337483625