Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetrahymena_20borealis_20[genbank_20GCA_5F000260095.1_202012-05-01] 325 sequences; 93,506,076 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq121 127 1e-24 seq77 109 4e-19 seq41 91.5 1e-13 seq81 84.2 2e-11 seq135 82.4 5e-11 >seq121 Length=281021 Score = 127 bits (140), Expect = 1e-24 Identities = 194/273 (71%), Gaps = 5/273 (2%) Strand=Plus/Minus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 |||| || | ||||||||||| || || || |||||||||||| | ||||| | | | Sbjct 223905 AATGTAACTTTTTATTAAAACTTTGACAGGTAAAACCATTACCCTTGAAACTAATGGATC 223846 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 |||||| | | || ||||| ||| ||| |||||||| ||| | ||| | |||| Sbjct 223845 AGAAACAATAGAAAATGTTAAGGCAAAGATTTAAGATAAAGAAGGTATTCCTCCAGACCA 223786 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 | |||||||||| |||||||| || ||||||| ||| || |||||| || || || Sbjct 223785 ATAGAGACTTATTTTTGCTGGTAAGTAACTAGAGGATGGAAGAACTATCTATGACTATAA 223726 Query 22013 TATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGATAT--TAAT-- 22068 ||| | || || ||||| ||||| | || ||| | || |||| || | | |||| Sbjct 223725 TATCTAAAAAGACTCTACCCTTCACTTAGTGTTAAGGCTAAGAGGTGGCTGTTATAATTG 223666 Query 22069 AATAAAAACCATAAATATACATTAAATTTTTTA 22101 ||||| | ||||||| | ||||| | |||| Sbjct 223665 AATAAGATTTATAAATA-ATTTTAAAATATTTA 223634 >seq77 Length=437778 Score = 109 bits (120), Expect = 4e-19 Identities = 170/243 (70%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||| |||| ||| |||||||||| || || ||||| || || | || |||||| | Sbjct 1465 ATGTAAATCTTTGTTAAAACATTGACTGGTAAAACAATCACTCTAGATGTTGAAGCCTCT 1406 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || | | | | | ||| || ||| ||||| || ||| | ||| | || Sbjct 1405 GACTCTATTGAAAACGTCAAGGCTAAGATTTAAGATAAGGAAGGTATTCCTCCTGATTAA 1346 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 | ||||| || || ||||| ||| |||| |||||| || |||| | | || |||||| Sbjct 1345 TAAAGACTCATTTTCGCTGGTAAATAACTTGAAGATGGAAGAACTCTTTCTGACTACAAT 1286 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGATATTAATAATAA 22073 ||||| ||||||||||||||||| | ||||| | ||| ||||||| | ||||| ||| Sbjct 1285 ATTCAAAAGGAATCTACTCTTCACTTAGTATTGAGATTAAGAGGAGGTTCTTAATGATAG 1226 Query 22074 AAA 22076 ||| Sbjct 1225 AAA 1223 Score = 104 bits (114), Expect = 2e-17 Identities = 169/242 (70%), Gaps = 1/242 (0%) Strand=Plus/Minus Query 21819 AAGTAATAGTGCAAAATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTG 21878 || ||||| | || | || |||| || |||| || || || || || ||||| || | Sbjct 1935 AAATAATAATACACA-TGTAAATTTTCGTTAAGACTTTGACTGGTAAGACCATCACTCTC 1877 Query 21879 GAAACGGAAGCCGCAGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGT 21938 || |||||| | || | | | || | ||| || ||| ||||| || ||| Sbjct 1876 GATGTTGAAGCCTCTGACTCTATTGAAAATGTCAAGGCTAAGATTTAAGATAAGGAAGGT 1817 Query 21939 GTACCTGTAAACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACT 21998 | ||| | || | |||||||| |||||||| |||||||| |||||| || |||| Sbjct 1816 ATTCCTCCTGATTAATAAAGACTTATTTTTGCTGGTAAACAACTCGAAGATGGAAGAACT 1757 Query 21999 ATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGA 22058 | |||| ||||||||||| || |||||||||||||| | |||||| | ||| |||| Sbjct 1756 CTTTCCGACTACAATATTCAAAAAGAATCTACTCTTCACTTAGTATTAAGATTAAGAGGT 1697 Query 22059 GG 22060 || Sbjct 1696 GG 1695 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||| | || || ||||| || || || || || |||||||| | || |||||| | Sbjct 1693 ATGTAGATTTTCATTAAGACTTTGACTGGTAAGACCATTACTCTCGATGTTGAAGCCTCT 1634 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || | | | | | ||| || ||| ||||| || ||| | ||| | || Sbjct 1633 GACTCTATTGAAAACGTCAAGGCTAAGATTTAAGATAAGGAAGGTATTCCTCCTGATTAA 1574 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 | |||||||| || ||||| ||| |||| |||||| || |||| | |||| |||||| Sbjct 1573 TAAAGACTTATTTTCGCTGGTAAATAACTTGAAGATGGAAGAACTCTTTCCGACTACAAT 1514 Query 22014 ATTCAGAAGGAATCTACTCTTCA 22036 ||||| ||||||||||||||||| Sbjct 1513 ATTCAAAAGGAATCTACTCTTCA 1491 >seq41 Length=642683 Score = 91.5 bits (100), Expect = 1e-13 Identities = 96/126 (76%), Gaps = 3/126 (2%) Strand=Plus/Plus Query 21952 AACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACA 22011 |||| ||||||||||| ||||| || ||||| |||||| | |||| | | || || | Sbjct 166131 AACAAAGACTTATCTTCGCTGGTAAGCAACTTGAAGATGGCAGAACTCTTTCTGACTATA 166190 Query 22012 ATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGATATT---AAT 22068 ||||||| |||||||| |||||||| | || ||| | ||| |||| || || | ||| Sbjct 166191 ATATTCAAAAGGAATCAACTCTTCACTTAGTTTTAAGATTAAGAGGTGGCTAATGAAAAT 166250 Query 22069 AATAAA 22074 |||||| Sbjct 166251 AATAAA 166256 >seq81 Length=427612 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 21832 AAATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCG 21891 ||||| |||| || |||| || ||||| || || ||||||||| | || |||||| Sbjct 245411 AAATGTAAATTTTCGTTAAGACTTTAACTGGTAAGACCATTACCTTAGACGTTGAAGCCT 245352 Query 21892 CAGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACC 21951 | || || | | || | ||| || || ||||| || ||| | || | Sbjct 245351 CTGACACTATTGAAAATGTCAAGGCCAAGATCCAAGATAAGGAAGGTATCCCCCCCGATT 245292 Query 21952 AACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACA 22011 || | ||||||||||| ||||| || ||||| ||||| | ||| | ||||||||| Sbjct 245291 AATAAAGACTTATCTTCGCTGGTAAGCAACTTGAAGACGGCAGAACCCTTTCCGATTACA 245232 Query 22012 ATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 | || || ||||||||||| ||||| | || || | ||| |||| || Sbjct 245231 ACATCCAAAAGGAATCTACCCTTCACTTAGTCTTGAGATTAAGAGGTGG 245183 >seq135 Length=235529 Score = 82.4 bits (90), Expect = 5e-11 Identities = 97/130 (75%), Gaps = 5/130 (4%) Strand=Plus/Minus Query 21951 CAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTAC 22010 ||| | ||||||||||||||||| || |||| |||||| || ||| | | || ||| Sbjct 235500 CAATAAAGACTTATCTTTGCTGGTAAGTAACTTGAAGATGGAAGAACCCTTTCTGACTAC 235441 Query 22011 AATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG----ATATTA 22066 |||||| | |||||||| ||||| || | || ||| | ||| |||| || |||| | Sbjct 235440 AATATTTAAAAGGAATCAACTCTCCACTTAGTTTTAAGATTAAGAGGTGGTTGAATATAA 235381 Query 22067 AT-AATAAAA 22075 || ||||||| Sbjct 235380 ATCAATAAAA 235371 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 358123381490050