Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetrahymena_20borealis_20[genbank_20GCA_5F000260095.1_202012-05-01] 325 sequences; 93,506,076 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq77 105 6e-18 seq81 96.9 3e-15 seq105 91.5 1e-13 seq24 82.4 6e-11 >seq77 Length=437778 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| || | || |||||| ||||| || | |||||||| |||||||| ||||| || Sbjct 1238 ACCTCCTCTTAATCTCAATACTAAGTGAAGAGTAGATTCCTTTTGAATATTGTAGTCAGA 1297 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 | ||| | ||||||||||| |||||||||| | ||||| | | || || ||||| Sbjct 1298 AAGAGTTCTTCCATCTTCAAGTTATTTACCAGCGAAAATGAGTCTTTATTAATCAGGAGG 1357 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 ||| ||||| || || |||||| || | | ||||| | ||| | || ||| || Sbjct 1358 AATACCTTCCTTATCTTAAATCTTAGCCTTGACGTTTTCAATAGAGTCAGAGGCTTCAAC 1417 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || | || | ||||| || |||| ||||| ||||| || | ||| Sbjct 1418 ATCTAGAGTGATTGTTTTACCAGTCAATGTTTTAACAAAGATTTACAT 1465 Score = 105 bits (116), Expect = 6e-18 Identities = 174/250 (70%), Gaps = 2/250 (1%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| || | || ||| || ||||| || | ||||||||||||||||| ||||| ||| Sbjct 1692 ATACCACCTCTTAATCTTAATACTAAGTGAAGAGTAGATTCTTTTTGAATATTGTAGTCG 1751 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | ||| | |||||| |||||||||||||| | || || | | || || ||| Sbjct 1752 GAAAGAGTTCTTCCATCTTCGAGTTGTTTACCAGCAAAAATAAGTCTTTATTAATCAGGA 1811 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| ||||| || || |||||| || | | ||||| | ||| | || ||| Sbjct 1812 GGAATACCTTCCTTATCTTAAATCTTAGCCTTGACATTTTCAATAGAGTCAGAGGCTTCA 1871 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCTTAATTA 114392 || || | || | || || || |||| ||| || || ||||| | |||| | |||| Sbjct 1872 ACATCGAGAGTGATGGTCTTACCAGTCAAAGTCTTAACGAAAATTTACATG--TGTATTA 1929 Query 114393 TTCCTTTCCT 114402 || |||||| Sbjct 1930 TTATTTTCCT 1939 Score = 98.7 bits (108), Expect = 8e-16 Identities = 165/238 (69%), Gaps = 2/238 (1%) Strand=Plus/Plus Query 114145 ATTTACAAATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGT 114204 ||||||| |||| || | | ||| | |||||| || | |||||||| |||||||| | Sbjct 1458 ATTTACA--TACCACCTCTCAATCTAAGAACTAAGTGAAGAGTAGATTCCTTTTGAATAT 1515 Query 114205 TGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTT 114264 |||| ||| | ||| | ||||||||||| |||||||||| | || || | | || Sbjct 1516 TGTAGTCGGAAAGAGTTCTTCCATCTTCAAGTTATTTACCAGCGAAAATAAGTCTTTATT 1575 Query 114265 GGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGG 114324 || |||||||| ||||| || || |||||| || | | ||||| | ||| | Sbjct 1576 AATCAGGAGGAATACCTTCCTTATCTTAAATCTTAGCCTTGACGTTTTCAATAGAGTCAG 1635 Query 114325 TGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || ||| || || | || | || || || |||| ||| || | ||||||| ||| Sbjct 1636 AGGCTTCAACATCGAGAGTAATGGTCTTACCAGTCAAAGTCTTAATGAAAATCTACAT 1693 >seq81 Length=427612 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| || | || |||||| ||||| || | |||||||| ||||| |||||||||||| Sbjct 245182 ACCACCTCTTAATCTCAAGACTAAGTGAAGGGTAGATTCCTTTTGGATGTTGTAATCGGA 245241 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 | || | ||||||||||| ||||||||| |||| || | | || || || || Sbjct 245242 AAGGGTTCTGCCGTCTTCAAGTTGCTTACCAGCGAAGATAAGTCTTTATTAATCGGGGGG 245301 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 || ||||| || || ||||| || | | ||||| ||||| | || ||| || Sbjct 245302 GATACCTTCCTTATCTTGGATCTTGGCCTTGACATTTTCAATAGTGTCAGAGGCTTCAAC 245361 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 ||| | ||| | || || || || | ||| || || ||||| | ||| Sbjct 245362 GTCTAAGGTAATGGTCTTACCAGTTAAAGTCTTAACGAAAATTTACAT 245409 >seq105 Length=326417 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| || | |||||| || ||||| || | ||||||||||||| || || || || Sbjct 7566 ACCACCTCTTAGTCTTAACACTAAGTGAAGGGTAGATTCTTTTTAGATATTATAGTCAGA 7625 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 ||||| | |||||||||||| || || || | || || | | || || ||||| Sbjct 7626 GATAGTTCTTCCATCTTCAAGTTGCTTTCCTGCAAATATAAGTCTTTATTAATCAGGAGG 7685 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGC-TGTTCAACGGTGTCGGTGGATTCGA 114333 || ||||| || || ||| || |||||| | | ||||| ||| || | ||| | | Sbjct 7686 GATACCTTCCTTATCTTGAAT-TTAAGTTTTAACATTTTCAATGGTATCAGCGGAATTAA 7744 Query 114334 CGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || | || | || || || || ||||||||||||||||||| ||| Sbjct 7745 TATCAAGAGTGATAGTCTTTCCTGTAAGAGTTTTTACAAAAATCTACAT 7793 Score = 82.4 bits (90), Expect = 6e-11 Identities = 148/214 (69%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 114170 CAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATC 114229 ||| |||||||| | || |||||||||| || || ||||| ||||| | ||| Sbjct 8040 CAATACTAAATGGAGAGTTGATTCTTTTTAGATATTATAATCAGAGATAGTTCTTCCATC 8099 Query 114230 TTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTC 114289 ||||||||| || || || | || || | | || || ||||| || ||||| || || Sbjct 8100 TTCAAGTTGCTTTCCTGCAAAAATAAGTCTTTATTAATCAGGAGGGATACCTTCCTTATC 8159 Query 114290 GGCAATCTTTTGTTTTAGC-TGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCG 114348 ||| || |||||| | | ||||| || || | ||| | | ||| | || | | Sbjct 8160 TTGAAT-TTAAGTTTTAACATTTTCAATAGTATCAGCGGAATTAATGTCAAGAGTGATAG 8218 Query 114349 TTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 | || || || |||||||||||||||| || ||| Sbjct 8219 TCTTTCCTGTAAGAGTTTTTACAAAAACCTACAT 8252 >seq24 Length=964434 Score = 82.4 bits (90), Expect = 6e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 114228 TCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTG 114287 ||||||||||| ||||||||| |||| || | |||| || || || || ||||| ||| Sbjct 626670 TCTTCAAGTTGCTTACCAGCGAAGATAAGTCTTTGTTAATCGGGGGGGATACCTTCCTTG 626611 Query 114288 TCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACC 114347 || ||||| || | | ||||| || |||| | ||| ||||||| || | Sbjct 626610 TCTTGGATCTTAGCCTTGACGTTTTCAATAGTATCGGAAGCTTCAACGTCCAAAGTAATG 626551 Query 114348 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 ||||| || || || ||||| || ||||| ||||| Sbjct 626550 GTTTTACCAGTGAGGGTTTTAACGAAAATTTGCAT 626516 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420132735873900