Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetrahymena_20borealis_20[genbank_20GCA_5F000260095.1_202012-05-01] 325 sequences; 93,506,076 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq81 104 2e-17 seq77 91.5 1e-13 seq2 82.4 8e-11 >seq81 Length=427612 Score = 104 bits (114), Expect = 2e-17 Identities = 155/220 (70%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 64226 AATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGC 64285 ||||| | |||| |||| || ||||| ||||| ||||||||||| | | ||| | Sbjct 245192 AATCTCAAGACTAAGTGAAGGGTAGATTCCTTTTGGATGTTGTAATCGGAAAGGGTTCTG 245251 Query 64286 GCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCT 64345 |||||||||| ||||| || || | || || | | | ||||| || || ||||| Sbjct 245252 CCGTCTTCAAGTTGCTTACCAGCGAAGATAAGTCTTTATTAATCGGGGGGGATACCTTCC 245311 Query 64346 TTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTT 64405 || ||||| || || ||| ||| || | || ||| ||| || || |||| || Sbjct 245312 TTATCTTGGATCTTGGCCTTGACATTTTCAATAGTGTCAGAGGCTTCAACGTCTAAGGTA 245371 Query 64406 ACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTT 64445 | |||||| || || ||||| || |||||||||| ||||| Sbjct 245372 ATGGTCTTACCAGTTAAAGTCTTAACGAAAATTTACATTT 245411 >seq77 Length=437778 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 64226 AATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGC 64285 ||||| | |||| |||| || |||||||||||||| ||||| || | | || | Sbjct 1704 AATCTTAATACTAAGTGAAGAGTAGATTCTTTTTGAATATTGTAGTCGGAAAGAGTTCTT 1763 Query 64286 GCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCT 64345 | ||||| || || || || ||| |||| || | | | || |||||||| ||||| Sbjct 1764 CCATCTTCGAGTTGTTTACCAGCAAAAATAAGTCTTTATTAATCAGGAGGAATACCTTCC 1823 Query 64346 TTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTT 64405 || |||| || || ||| ||| || | | ||| ||| || || || | ||| Sbjct 1824 TTATCTTAAATCTTAGCCTTGACATTTTCAATAGAGTCAGAGGCTTCAACATCGAGAGTG 1883 Query 64406 ACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 | |||||| || |||||||| || |||||||||| ||| Sbjct 1884 ATGGTCTTACCAGTCAAAGTCTTAACGAAAATTTACAT 1921 >seq2 Length=2195051 Score = 82.4 bits (90), Expect = 8e-11 Identities = 108/150 (72%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 154586 AGACGCCAAGTTGCAAACGGCAATTTCTTCAGAACTACTGTATTGCACAATTTCTGCGCA 154645 ||| || || |||||||| |||| || |||| | |||||| |||||||| | ||| Sbjct 429151 AGAAGCTAAATTGCAAACTGCAACCTCATCAGGGGCAGTGTATTCAACAATTTCAGTGCA 429092 Query 154646 CAAATTACTGCATCGAATGGTGCCCAGGTTTTTCTGATTCGATTTGATGTTGCATGCGTC 154705 | ||| | | ||| || || ||||||| ||||| || || ||||||| || || Sbjct 429091 GAGGTTAGAACTTTTAATTGTACCTAGGTTTTATTGATTTGACTTTCTGTTGCAAGCATC 429032 Query 154706 TTTGTACAAAATGTACGGGGTGCCCGTTTC 154735 ||||| | ||||| || ||||||||||| Sbjct 429031 CTTGTAGAGCATGTAGGGAGTGCCCGTTTC 429002 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499642770193000