Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetrahymena_20borealis_20[genbank_20GCA_5F000260095.1_202012-05-01] 325 sequences; 93,506,076 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq81 131 1e-25 seq121 105 5e-18 seq105 95.1 9e-15 seq24 93.3 3e-14 >seq81 Length=427612 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||||| ||||| || ||||| ||||||||||| || ||||| |||||||||||| Sbjct 245183 CCACCTCTTAATCTCAAGACTAAGTGAAGGGTAGATTCCTTTTGGATGTTGTAATCGGAA 245242 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || |||| ||||||| | ||| || |||||| | || | | | || ||| || Sbjct 245243 AGGGTTCTGCCGTCTTCAAGTTGCTTACCAGCGAAGATAAGTCTTTATTAATCGGGGGGG 245302 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || |||||||| || || ||| || ||| |||| ||||| || ||| ||| Sbjct 245303 ATACCTTCCTTATCTTGGATCTTGGCCTTGACATTTTCAATAGTGTCAGAGGCTTCAACG 245362 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 |||||||||||||| ||||| || | ||| || || ||||||| ||| Sbjct 245363 TCTAAGGTAATGGTCTTACCAGTTAAAGTCTTAACGAAAATTTACAT 245409 >seq121 Length=281021 Score = 105 bits (116), Expect = 5e-18 Identities = 165/232 (71%), Gaps = 8/232 (3%) Strand=Plus/Plus Query 14949 GCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCT 15008 |||||||| | ||||| ||||| ||||||||||| ||||||| || || || || Sbjct 223677 GCCACCTCTTAGCCTTAACACTAAGTGAAGGGTAGAGTCTTTTTAGATATTATAGTCATA 223736 Query 15009 GAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGG 15068 || | |||| | || |||| || || ||||| | || | | || |||||| || Sbjct 223737 GATAGTTCTTCCATCCTCTAGTTACTTACCAGCAAAAATAAGTCTCTATTGGTCTGGAGG 223796 Query 15069 AATTCCTTCCTTGTCACAAAT-TTTGCTTTTTACAATTTCTATAGTATC---GCTATTTT 15124 ||| ||||| || || |||| ||||| || ||| ||||||| || || | ||| Sbjct 223797 AATACCTTCTTTATCTTAAATCTTTGC-CTTAACATTTTCTATTGTTTCTGATCCATTAG 223855 Query 15125 CTACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 | || | |||||||||||||||||||| |||||| | ||||| || ||| Sbjct 223856 TT---TCAAGGGTAATGGTTTTACCTGTCAAAGTTTTAATAAAAAGTTACAT 223904 >seq105 Length=326417 Score = 95.1 bits (104), Expect = 9e-15 Identities = 161/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||||| | |||||| ||||| ||||||||||| ||||||| || || || || | Sbjct 7567 CCACCTCTTAGTCTTAACACTAAGTGAAGGGTAGATTCTTTTTAGATATTATAGTCAGAG 7626 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 | | |||| | ||||| | ||| || || || |||| | | | || || || Sbjct 7627 ATAGTTCTTCCATCTTCAAGTTGCTTTCCTGCAAATATAAGTCTTTATTAATCAGGAGGG 7686 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATC-GC-TATTTTCTA 15127 || |||||||| || ||||| |||| ||| |||| || ||||| || | || || Sbjct 7687 ATACCTTCCTTATCTTGAATTTAAGTTTTAACATTTTCAATGGTATCAGCGGAATTAATA 7746 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || | || || || || ||||| ||||||||||||||||| | |||| Sbjct 7747 --TCAAGAGTGATAGTCTTTCCTGTAAGAGTTTTTACAAAAATCTACATA 7794 >seq24 Length=964434 Score = 93.3 bits (102), Expect = 3e-14 Identities = 119/163 (73%), Gaps = 1/163 (1%) Strand=Plus/Minus Query 15020 CGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCT 15079 ||||||| | ||| || |||||| | || | | |||| ||| || || ||||||| Sbjct 626672 CGTCTTCAAGTTGCTTACCAGCGAAGATAAGTCTTTGTTAATCGGGGGGGATACCTTCCT 626613 Query 15080 TGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAA 15139 |||| || || || || |||| ||||||||| | ||| ||||| || |||| Sbjct 626612 TGTCTTGGATCTTAGCCTTGACGTTTTCAATAGTATCGGAAGCTTCAACGTCCAAAGTAA 626553 Query 15140 TGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGA 15182 |||||||||| || || ||||| || ||||||||||| ||||| Sbjct 626552 TGGTTTTACCAGTGAGGGTTTTAACGAAAATTTGCAT-TTTGA 626511 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357390584392625