Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetrahymena_20borealis_20[genbank_20GCA_5F000260095.1_202012-05-01] 325 sequences; 93,506,076 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq105 91.5 1e-13 seq2 86.0 6e-12 >seq105 Length=326417 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 45123 AGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTA 45182 || || ||||||| || || || ||||| |||| ||||||||| || || ||| | Sbjct 7576 AGTCTTAACACTAAGTGAAGGGTAGATTCTTTTTAGATATTATAGTCAGAGATAGTTCTT 7635 Query 45183 GAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCT 45242 ||| || | ||| |||||||| |||| | || || | || || || || ||||| Sbjct 7636 CCATCTTCAAGTTGCTTTCCTGCAAATATAAGTCTTTATTAATCAGGAGGGATACCTTCC 7695 Query 45243 TTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTA 45302 ||||||||||||| ||| | ||| | ||| || | || | | || ||||| Sbjct 7696 TTATCTTGAATTTAAGTTTTAACATTTTCAATGGTATCAGCGGAATTAATATCAAGAGTG 7755 Query 45303 ACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 | || || || || ||||||||||||||||| | ||| Sbjct 7756 ATAGTCTTTCCTGTAAGAGTTTTTACAAAAATCTACAT 7793 Score = 87.8 bits (96), Expect = 2e-12 Identities = 143/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 45128 CAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATC 45187 ||| |||| ||| || |||||||| |||| |||||||||||| || ||| | ||| Sbjct 8040 CAATACTAAATGGAGAGTTGATTCTTTTTAGATATTATAATCAGAGATAGTTCTTCCATC 8099 Query 45188 GTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATC 45247 || | ||| |||||||| | || | || || | || || || || ||||| ||||| Sbjct 8100 TTCAAGTTGCTTTCCTGCAAAAATAAGTCTTTATTAATCAGGAGGGATACCTTCCTTATC 8159 Query 45248 TTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGT 45307 |||||||| ||| | ||| | || || | || | | || ||||| | || Sbjct 8160 TTGAATTTAAGTTTTAACATTTTCAATAGTATCAGCGGAATTAATGTCAAGAGTGATAGT 8219 Query 45308 TTTGCCGGTTAGAGTTTTTACAAAAA 45333 || || || |||||||||||||||| Sbjct 8220 CTTTCCTGTAAGAGTTTTTACAAAAA 8245 >seq2 Length=2195051 Score = 86.0 bits (94), Expect = 6e-12 Identities = 110/152 (72%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 123606 GAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAACAGGAAAACCAATCAGAGC 123665 ||||| || || || |||||||||||||| || || |||||||| || | ||||| Sbjct 429002 GAAACGGGCACTCCCTACATGCTCTACAAGGATGCTTGCAACAGAAAGTCAAATCAATAA 429061 Query 123666 AACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATTATCGAATACAGCGATGCC 123725 ||| | || ||||| ||| || ||| || ||| | |||||| | ||||||| | | Sbjct 429062 AACCTAGGTACAATTAAAAGTTCTAACCTCTGCACTGAAATTGTTGAATACACTGCCCCT 429121 Query 123726 GATCAAGTGGCCGTGTGTAATTTGGCTTCGAT 123757 ||| | || || || || ||||| ||||| || Sbjct 429122 GATGAGGTTGCAGTTTGCAATTTAGCTTCTAT 429153 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 452001363737000