Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetrahymena_20borealis_20[genbank_20GCA_5F000260095.1_202012-05-01] 325 sequences; 93,506,076 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq2 127 3e-24 seq28 84.2 3e-11 >seq2 Length=2195051 Score = 127 bits (140), Expect = 3e-24 Identities = 358/540 (66%), Gaps = 15/540 (3%) Strand=Plus/Plus Query 111704 GTTCATCCACGCAACACCAACCCTCTTCAACGCTGGTACACCAAGACCCCAAATGTCCAG 111763 ||||| || || || || || || ||||| | ||||| || | ||| ||||| || Sbjct 428337 GTTCACTCATGCTACTCCTACTCTTTTCAATTCAGGTACTCCCAAGCCCTAAATGAGTAG 428396 Query 111764 TTGTTTCCTTATTGCAAAC--AAGGAGGATTCAATCAATGGCATTTACGGCACTCTCACT 111821 ||||||| ||| | |||| ||| || |||| || | || ||||| | |||||| | Sbjct 428397 TTGTTTC-TTACTTCAAATGTAAGCAG-ATTCCATAGACGGTATTTATGACACTCTTAAG 428454 Query 111822 GAATGTGCCCAAATCTCAAAGTGGGCTGGTGGTATCGGGATGCACATCCATGATGTCAGA 111881 ||||||| |||||| ||| | || |||||||| || | | | ||| || ||||| Sbjct 428455 CAATGTGCTTTAATCTCTAAGAGTGCAGGTGGTATTGGTCTTTCCGTTCATAATATCAGA 428514 Query 111882 GCCAACAAGTCTCGTATTAGAGGTACAAATGGTCAATCAGATGGTATTATTCCAATGCTT 111941 || | | | ||||||||||||||||||| || |||| || |||| ||||| Sbjct 428515 GCTAGAGATAGTTATATTAGAGGTACAAATGGTATTTCTAATGGACTTGTTCCTATGCTC 428574 Query 111942 CGCGTATTTAACGCCACAGCGCGCTATGTAAACCAAGCTG--GGC-GTCGCAAGGGATCT 111998 || || || || | || || | ||||| | |||| || ||| | ||||| || Sbjct 428575 CGTGTCTTCAATGATACTGCTAGATATGTTGATCAAGGTGGTGGCAAGAGAAAGGGTTCC 428634 Query 111999 ATCGCAGTCTATCTTGAGCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTC 112058 | || || || | || || ||||| | ||| | | || |||||| ||||| Sbjct 428635 TTTGCCGTTTACTTAGAACCTTGGCATTCTGATGTTTTCGACTTCCTTTAGTTGAAGAAG 428694 Query 112059 AACCAAGGTGATGAGGAGGCGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGAT 112118 || || ||| | || || | | ||| | |||| || || |||||||| ||| Sbjct 428695 AATCACGGTAAGGAAGAATAAAGAGCTAGAGATTTATTCTTTGCACTTTGGATTCCCGAT 428754 Query 112119 CTCTTCATGAAGAGAG---TTGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCC-AGACAA 112174 || ||||||||||||| ||| || ||| || ||| |||| | ||||| | || Sbjct 428755 CTTTTCATGAAGAGAGTCATTGCTGA---TGGAAAATGGACTCTTATGTGTCCTAATGAA 428811 Query 112175 GGCACCCGGTCTCTCCGATGCCGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTACGA 112234 || || || || | |||| |||||| || |||||||| || || || || || || Sbjct 428812 TGC-CCTGGACTTCCTGATGTTTGGGGTGATGAATTTGAAGCTCTTTATACTAAATATGA 428870 >seq28 Length=897071 Score = 84.2 bits (92), Expect = 3e-11 Identities = 184/271 (68%), Gaps = 5/271 (2%) Strand=Plus/Plus Query 102051 ATAGACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAAACA 102110 || |||| ||||||||||||| |||| ||| | || ||| ||| | || || | Sbjct 62454 ATTGACACCTATATTAAGGATGAAACTGAAAAGGAATTCCT-TTTCAAGGCCTCTCAAAA 62512 Query 102111 GTTCCATGT-ATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGTCGCG 102169 ||| ||| ||| | ||||| || | |||||| | |||||| | ||| || || Sbjct 62513 TGTCCCTGTCATTAACAAGAAGGCTCAATGGGCTCTTAAGTGGATCAATAACAA--CG-A 62569 Query 102170 TTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTC 102229 | ||||||| ||||| | || ||||| | || ||||| |||||| |||| Sbjct 62570 TAACTTTGCTTCCAGACTCATTGCTTTTGCTGCCATCGAAGGTATATTCTTCAGTGGTAG 62629 Query 102230 CTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAA 102289 ||||| || || | ||||| |||||||| | | ||||| ||| | ||||||||| Sbjct 62630 TTTCTGTGCCATCTTCTGGCTTAAGAAGCGTTCTTTAATGCCCGGTTTGACCTTCTCCAA 62689 Query 102290 CGAGCTTATCTCTCGTGACGAGGGACTCCAC 102320 || || || ||| | || || || |||||| Sbjct 62690 TGAACTCATTTCTAGAGATGAAGGCCTCCAC 62720 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620739878234000