Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetrahymena_20borealis_20[genbank_20GCA_5F000260095.1_202012-05-01] 325 sequences; 93,506,076 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq2 120 4e-22 >seq2 Length=2195051 Score = 120 bits (132), Expect = 4e-22 Identities = 165/230 (72%), Gaps = 3/230 (1%) Strand=Plus/Minus Query 106388 GTAACAATCTTTGTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTG 106447 ||||| ||||| | ||||||| ||| |||| |||||| | | | | ||| || Sbjct 429228 GTAACTATCTTAGCAATTTCATAAAGCTTTTGGTAATCATATTCTCTATT---TTCCTTA 429172 Query 106448 ACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTG 106507 ||| | || ||| | ||| || || ||||||||||| || |||||| | ||| Sbjct 429171 ACAAATTTAACAAGAGAGATAGAAGCTAAATTGCAAACTGCAACCTCATCAGGGGCAGTG 429112 Query 106508 TACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTA 106567 || || | |||||| || || | ||| ||||| ||||| || || | || | ||| || Sbjct 429111 TATTCAACAATTTCAGTGCAGAGGTTAGAACTTTTAATTGTACCTAGGTTTTATTGATTT 429052 Query 106568 CTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTC 106617 |||| ||||||| ||||||||||||||||||||||| || ||||| || Sbjct 429051 GACTTTCTGTTGCAAGCATCCTTGTAGAGCATGTAGGGAGTGCCCGTTTC 429002 Score = 111 bits (122), Expect = 2e-19 Identities = 353/538 (66%), Gaps = 11/538 (2%) Strand=Plus/Minus Query 106688 TCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCC 106747 || || || || || || |||||||| || |||||| | || | || || || || Sbjct 428870 TCATATTTAGTATAAAGAGCTTCAAATTCATCACCCCAAACATCAGGAAGTCCAGG-GCA 428812 Query 106748 TTGTCT-GGACAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTC 106806 || | ||||| | ||||| ||||| ||| | | || | |||||||||||| || Sbjct 428811 TTCATTAGGACACATAAGAGTCCATTTTCCATCAGCAATGACTCTCTTCATGAAAAGATC 428752 Query 106807 TGGAATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAG 106866 |||||||| || | | || | ||||||| | ||||| | ||| || || Sbjct 428751 GGGAATCCAAAGTGCAAAGAATAAATCTCTAGCTCTTTATTCTTCCTTACCGTGATT-CT 428693 Query 106867 TCGT-AACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAG 106925 || | |||| |||||| || | | ||| | ||||| || || | || || || | | Sbjct 428692 TCTTCAACTAAAGGAAGTCGAAAACATCAGAATGCCAAGGTTCTAAGTAAACGGCAAAGG 428633 Query 106926 ATCCCTTTC---GACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAA 106982 | ||||||| | ||| |||||| ||||| | || || | || || || || | Sbjct 428632 AACCCTTTCTCTTGCCACCACCTTGATCAACATATCTAGCAGTATCATTGAAGACACGGA 428573 Query 106983 GCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTC 107042 |||| |||| || |||| || ||||||||| || | |||| | | | |||| Sbjct 428572 GCATAGGAACAAGTCCATTAGAAATACCATTTGTACCTCTAATATAACTATCTCTAGCTC 428513 Query 107043 TCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCG 107102 | | || ||| | | | |||||||| || || | ||| |||||| ||||| | | Sbjct 428512 TGATATTATGAACGGAAAGACCAATACCACCTGCACTCTTAGAGATTAAAGCACATTGCT 428453 Query 107103 TAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTT--GTTGGCGATAAGGAAGCAACT 107160 ||||||| |||| ||||||| || || | || ||| || | ||| ||| ||||| Sbjct 428452 TAAGAGTGTCATAAATACCGTCTATGGAAT-CTGCTTACATTTGAAGTAA-GAAACAACT 428395 Query 107161 GGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAAC 107218 ||| | || | || ||||| | |||||| || || || || || ||| ||||| Sbjct 428394 ACTCATTTAGGGCTTGGGAGTACCTGAATTGAAAAGAGTAGGAGTAGCATGAGTGAAC 428337 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589978403203000