Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetrahymena_20borealis_20[genbank_20GCA_5F000260095.1_202012-05-01] 325 sequences; 93,506,076 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq77 170 4e-37 seq81 161 2e-34 seq121 136 9e-27 seq105 131 4e-25 seq41 123 6e-23 seq24 113 1e-19 seq2 91.5 3e-13 >seq77 Length=437778 Score = 170 bits (188), Expect = 4e-37 Identities = 171/222 (77%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| | ||| || || | ||||||||| || ||||||||||||||||| |||| |||||| Sbjct 1700 TCTTAATCTTAATACTAAGTGAAGAGTAGATTCTTTTTGAATATTGTAGTCGGAAAGAGT 1759 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 ||| ||||||||||| || ||||| || || ||||||| || || || |||||||| || Sbjct 1760 TCTTCCATCTTCGAGTTGTTTACCAGCAAAAATAAGTCTTTATTAATCAGGAGGAATACC 1819 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 ||| || |||| ||| || |||||| || ||||| | ||| || ||| || || || Sbjct 1820 TTCCTTATCTTAAATCTTAGCCTTGACATTTTCAATAGAGTCAGAGGCTTCAACATCGAG 1879 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || | ||||| || |||||||| || ||||| | || ||| Sbjct 1880 AGTGATGGTCTTACCAGTCAAAGTCTTAACGAAAATTTACAT 1921 Score = 163 bits (180), Expect = 6e-35 Identities = 164/213 (77%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| | ||| | ||| | ||||||||| || || |||||||||||||| |||| |||||| Sbjct 1472 TCTCAATCTAAGAACTAAGTGAAGAGTAGATTCCTTTTGAATATTGTAGTCGGAAAGAGT 1531 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 ||| |||||||| || | ||||| ||||| ||||||| || || || |||||||| || Sbjct 1532 TCTTCCATCTTCAAGTTATTTACCAGCGAAAATAAGTCTTTATTAATCAGGAGGAATACC 1591 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 ||| || |||| ||| || ||||||||| ||||| | ||| || ||| || || || Sbjct 1592 TTCCTTATCTTAAATCTTAGCCTTGACGTTTTCAATAGAGTCAGAGGCTTCAACATCGAG 1651 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAA 195131 |||| ||||| || |||||||| || | ||| Sbjct 1652 AGTAATGGTCTTACCAGTCAAAGTCTTAATGAA 1684 Score = 152 bits (168), Expect = 1e-31 Identities = 167/222 (75%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| | |||||| || | ||||||||| || || |||||||||||||| || | |||||| Sbjct 1244 TCTTAATCTCAATACTAAGTGAAGAGTAGATTCCTTTTGAATATTGTAGTCAGAAAGAGT 1303 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 ||| |||||||| || | ||||| ||||| || |||| || || || |||||||| || Sbjct 1304 TCTTCCATCTTCAAGTTATTTACCAGCGAAAATGAGTCTTTATTAATCAGGAGGAATACC 1363 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 ||| || |||| ||| || ||||||||| ||||| | ||| || ||| || || || Sbjct 1364 TTCCTTATCTTAAATCTTAGCCTTGACGTTTTCAATAGAGTCAGAGGCTTCAACATCTAG 1423 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || | || || || ||||| ||||| || || | || ||| Sbjct 1424 AGTGATTGTTTTACCAGTCAATGTTTTAACAAAGATTTACAT 1465 >seq81 Length=427612 Score = 161 bits (178), Expect = 2e-34 Identities = 170/224 (76%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| | |||||| || | |||||| || || || ||||| || |||||||||| ||| || Sbjct 245188 TCTTAATCTCAAGACTAAGTGAAGGGTAGATTCCTTTTGGATGTTGTAATCGGAAAGGGT 245247 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 ||| || ||||| || |||||||| ||||||||||||| || || || || || || || Sbjct 245248 TCTGCCGTCTTCAAGTTGCTTACCAGCGAAGATAAGTCTTTATTAATCGGGGGGGATACC 245307 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 ||| || ||||| || || |||||| || ||||| ||||| || ||| || || | Sbjct 245308 TTCCTTATCTTGGATCTTGGCCTTGACATTTTCAATAGTGTCAGAGGCTTCAACGTCTAA 245367 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATTT 195142 ||||| ||||| || || ||||| || ||||| | || ||||| Sbjct 245368 GGTAATGGTCTTACCAGTTAAAGTCTTAACGAAAATTTACATTT 245411 >seq121 Length=281021 Score = 136 bits (150), Expect = 9e-27 Identities = 164/223 (74%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| || || || || | |||||| || || ||||||| ||||| || || | ||| Sbjct 223683 TCTTAGCCTTAACACTAAGTGAAGGGTAGAGTCTTTTTAGATATTATAGTCATAGATAGT 223742 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 ||| ||||| || || | |||||| || || ||||||| | ||||||||||||||| || Sbjct 223743 TCTTCCATCCTCTAGTTACTTACCAGCAAAAATAAGTCTCTATTGGTCTGGAGGAATACC 223802 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 |||||| |||| ||| ||| ||| || || || || || || || | | |||||| Sbjct 223803 TTCTTTATCTTAAATCTTTGCCTTAACATTTTCTATTGTTTCTGATCCATTAGTTTCAAG 223862 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 ||||| || || |||||||||||||| | || | || |||| Sbjct 223863 GGTAATGGTTTTACCTGTCAAAGTTTTAATAAAAAGTTACATT 223905 >seq105 Length=326417 Score = 131 bits (144), Expect = 4e-25 Identities = 159/215 (74%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| ||||| || || | |||||| || || ||||||| ||||| || || | | ||| Sbjct 7572 TCTTAGTCTTAACACTAAGTGAAGGGTAGATTCTTTTTAGATATTATAGTCAGAGATAGT 7631 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 ||| |||||||| || ||||| ||||| || ||||||| || || || ||||| || || Sbjct 7632 TCTTCCATCTTCAAGTTGCTTTCCTGCAAATATAAGTCTTTATTAATCAGGAGGGATACC 7691 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTC--CGAACTTTCCACTTCA 195096 ||| || |||||||||| || || || |||||||| || || | || | ||| Sbjct 7692 TTCCTTATCTTGAATTTAAGTTTTAACATTTTCAATGGTATCAGCGGAATTAATA--TCA 7749 Query 195097 AGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAA 195131 || || | ||||||||||| | ||||||||| || Sbjct 7750 AGAGTGATAGTCTTTCCTGTAAGAGTTTTTACAAA 7784 Score = 122 bits (134), Expect = 2e-22 Identities = 151/205 (74%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 || ||||| || ||||||| ||||| ||||| | | |||||| |||||||| || ||| Sbjct 8050 TGGAGAGTTGATTCTTTTTAGATATTATAATCAGAGATAGTTCTTCCATCTTCAAGTTGC 8109 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 || ||||| || ||||||| || || || ||||| || ||||| || |||||||||| Sbjct 8110 TTTCCTGCAAAAATAAGTCTTTATTAATCAGGAGGGATACCTTCCTTATCTTGAATTTAA 8169 Query 195058 TGCTTGACGTTCTCAATGGTGTC--CGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTG 195115 || || || ||||| || || || | || | ||||| || | |||||||||| Sbjct 8170 GTTTTAACATTTTCAATAGTATCAGCGGAATTA--ATGTCAAGAGTGATAGTCTTTCCTG 8227 Query 195116 TCAAAGTTTTTACGAACACTTGCAT 195140 | | ||||||||| || || | ||| Sbjct 8228 TAAGAGTTTTTACAAAAACCTACAT 8252 >seq41 Length=642683 Score = 123 bits (136), Expect = 6e-23 Identities = 101/123 (82%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| | ||| ||||| | ||||||||| || || ||||||||||| || || | |||||| Sbjct 166234 TCTTAATCTTAAAACTAAGTGAAGAGTTGATTCCTTTTGAATATTATAGTCAGAAAGAGT 166175 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 ||| |||||||| || |||||||| ||||||||||||| ||||| || || ||||| || Sbjct 166174 TCTGCCATCTTCAAGTTGCTTACCAGCGAAGATAAGTCTTTGTTAATCAGGGGGAATACC 166115 Query 195039 TTC 195041 ||| Sbjct 166114 TTC 166112 >seq24 Length=964434 Score = 113 bits (124), Expect = 1e-19 Identities = 121/160 (76%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 || ||||| || |||||||| ||||||||||||| ||||| || || || || ||||| Sbjct 626673 CCGTCTTCAAGTTGCTTACCAGCGAAGATAAGTCTTTGTTAATCGGGGGGGATACCTTCC 626614 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 |||||||| || || ||||||||| ||||| || || ||| ||| || || | ||| Sbjct 626613 TTGTCTTGGATCTTAGCCTTGACGTTTTCAATAGTATCGGAAGCTTCAACGTCCAAAGTA 626554 Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATTT 195142 | || || || || | ||||| ||||| | |||||||| Sbjct 626553 ATGGTTTTACCAGTGAGGGTTTTAACGAAAATTTGCATTT 626514 Score = 89.7 bits (98), Expect = 1e-12 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| | ||| | || | ||| || || || || |||||||||||||| || | ||| || Sbjct 627530 TCTTAATCTAAGGACTAAGTGGAGGGTAGATTCCTTTTGAATATTGTAGTCAGAAAGGGT 627471 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTT 195022 ||| || ||||| || |||||||| ||||||||||||| ||||| Sbjct 627470 TCTGCCGTCTTCAAGTTGCTTACCAGCGAAGATAAGTCTTTGTT 627427 >seq2 Length=2195051 Score = 91.5 bits (100), Expect = 3e-13 Identities = 121/168 (72%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 160574 AGAGCCAGAGAGATTTTCTACGCCATCTGGACTTCCGATCTTTTCATGAAGAGAGTGAAA 160633 ||||| ||||| | |||| || | |||| | |||||||||||||||||||||| | Sbjct 428716 AGAGCTAGAGATTTATTCTTTGCACTTTGGATTCCCGATCTTTTCATGAAGAGAGTCATT 428775 Query 160634 GACAATGGGGATTGGAGCCTTTTCTGTCCCAATGAAGCGCCTGGACTTGATGATGTTTAT 160693 | |||| | |||| ||| | ||||| |||||| ||||||||| |||||||| Sbjct 428776 GCTGATGGAAAATGGACTCTTATGTGTCCTAATGAATGCCCTGGACTTCCTGATGTTTGG 428835 Query 160694 GGTTCCGAGTTCGAGACTCTTTATGAAAGATACGAAAAAGAGGGAAGA 160741 ||| || || || |||||||| | ||| ||||| || || ||| Sbjct 428836 GGTGATGAATTTGAAGCTCTTTATACTAAATATGAAAATGAAGGTAGA 428883 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109476980049275