Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetrahymena_20borealis_20[genbank_20GCA_5F000260095.1_202012-05-01] 325 sequences; 93,506,076 total letters Query= NC_015780.1 Length=205791 Score E Sequences producing significant alignments: (Bits) Value seq9 98.7 1e-15 >seq9 Length=1304334 Score = 98.7 bits (108), Expect = 1e-15 Identities = 354/547 (65%), Gaps = 15/547 (3%) Strand=Plus/Minus Query 104914 TGAAATTGGTGTTAAAGTATGGAATGATAATGGTTCACGTAAGTTTTTAGATTCTTGTGG 104973 ||||| ||||||||| | ||| | | || ||| ||| | |||||||||||| || Sbjct 106410 TGAAAAAGGTGTTAAAATTTGGGAAGGAAACGGTAGCCGTGAATTTTTAGATTCTCTAGG 106351 Query 104974 ATTTCACTTTCGAAAAGAAGGTGATTTAGGACCAATTTATGGATTTCAATGGAGACATGC 105033 ||| | | || ||||||| |||||||| ||| ||||||| || ||||||||||| Sbjct 106350 TTTTAAGAATAGATAAGAAGGCGATTTAGGTCCAGTTTATGGCTTCTAATGGAGACATTT 106291 Query 105034 TGGAGCTCAATATATCGACTGTG-ATACCGACTATACCGGCCAAGGTATAGACCAATTAA 105092 ||| || |||||| || | || |||| | ||| || |||| ||||| | || Sbjct 106290 TGGTGCAGAATATAAAGA-TATGCATACTAATTATTAAGGATAAGGAGTAGACTAGCTAT 106232 Query 105093 GTCAAGTTATAGAAACTATAAAAAATAACCCCGGGTGTCGAAGAATAATTATAGATAGTT 105152 | | || | || ||||| || || || | || ||||||| ||||| | | Sbjct 106231 AGGATTTAATTAACACCATAAAGAAAAATCCAGATAGTAGAAGAATGATTATGAGTGCAT 106172 Query 105153 GGAATGTGTCACAATTATCAGATATGGCTCTTCCACCGTGTCATTGTTTGGTACAATTTT 105212 |||||||| | | | || ||||| || || || || || || |||||| Sbjct 106171 GGAATGTGAAAGATCTTCCATTGATGGCACTACCTCCCTGCCACGTAATGAGTTAATTTT 106112 Query 105213 ACATTAGAAATAAAATTTATTTAGATTGTCAATTGTATCAAAGATCTGCAGATTTAGGAT 105272 | | |||| | | | ||| || ||||| ||||||| ||| | |||| Sbjct 106111 A---TGTAAATGATGGTAAATTAAGCTGCATGATGTATTAAAGATCATGTGATATGGGAT 106055 Query 105273 TAGGTGTACCATATAATATTGGTTTCTATTCATTTTTGGT-----GTGTGTTCTCTCAAA 105327 |||| | |||| |||||||| | ||| | |||| | | || | | | | Sbjct 106054 TAGGAATTCCATTTAATATTGCTAGTTATGC---TTTGCTAACTCATATGATTGCAC-AT 105999 Query 105328 ATGGTGTAATCTAACCCCCGGAAAATTTATTCATACTTTTGGAGATGTTCATGTATATTC 105387 || |||| | | ||| |||| | ||| ||| || |||| |||||| || || Sbjct 105998 ATAACATAAT-TGAAAGTAGGAGAATTCGTCCATGTTTTAGGTGATGCTCATGTTTACTC 105940 Query 105388 TAACCATGTTGACCAATTAAAAATTCAATTAAACAGAAAACCTTACACCTTCCCAAAGGT 105447 ||||||||||| ||||||||||| || || | |||| ||||| ||||||| | | Sbjct 105939 AAACCATGTTGAATAATTAAAAATTTAACTAGAAAGAACTCCTTATCCCTTCCCTATCTT 105880 Query 105448 GAAATTT 105454 |||| || Sbjct 105879 GAAAATT 105873 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658400525237000