Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetrahymena_20borealis_20[genbank_20GCA_5F000260095.1_202012-05-01] 325 sequences; 93,506,076 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq2 311 1e-79 >seq2 Length=2195051 Score = 311 bits (344), Expect = 1e-79 Identities = 472/670 (70%), Gaps = 4/670 (1%) Strand=Plus/Minus Query 48099 TCATGTTCGTATTTAGTATATAACTTCTCAAATTCATCCCCATACACATTATCTAACCCA 48158 |||| ||| ||||||||||| | ||||||||||| || | |||| | | ||| Sbjct 428876 TCATTTTCATATTTAGTATAAAGAGCTTCAAATTCATCACCCCAAACATCAGGAAGTCCA 428817 Query 48159 GGACATTCATTAGGACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAAT 48218 || ||||||||||||||||| | | ||| | ||||| | ||||| |||| || Sbjct 428816 GGGCATTCATTAGGACACATAAGAGTCCATTTTCCATCAGCAATGACTCTCTTCATGAAA 428757 Query 48219 ATATCTGGTATCCAAAGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTA 48278 | ||| || |||||||| || | |||||||| |||| |||| |||||| || || | Sbjct 428756 AGATCGGGAATCCAAAGTGCAAAGAATAAATCTCTAGCTCTTTATTCTTCCTTACCGTGA 428697 Query 48279 TTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCC 48338 ||| | || | | ||| ||||| | | ||||| |||||| |||||||| || | || Sbjct 428696 TTCTTCTTCAACTAAAGGAAGTCGAAAACATCAGAATGCCAAGGTTCTAAGTAAACGGCA 428637 Query 48339 ATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACT 48398 | ||| || || ||| |||||||| | |||||| ||||||| || | || Sbjct 428636 AAGGAACCCTTTCTCTTGCCACCACCTTGATCAACATATCTAGCAGTATCATTGAAGACA 428577 Query 48399 CTTAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTA 48458 | | ||| || |||| ||||| || |||||||| || || ||||||||| | ||| Sbjct 428576 CGGAGCATAGGAACAAGTCCATTAGAAATACCATTTGTACCTCTAATATAACTATCTCTA 428517 Query 48459 GCTCTTATATTACTAATTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACAC 48518 ||||| |||||| || |||| ||| ||||||||||| | ||||| |||| |||||| Sbjct 428516 GCTCTGATATTATGAACGGAAAGACCAATACCACCTGCACTCTTAGAGATTAAAGCACAT 428457 Query 48519 CGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAA 48578 | ||||| || |||||||| || ||||| ||| || ||| | | || |||||| Sbjct 428456 TGCTTAAGAGTGTCATAAATACCGTCTATGGAATCTGCTTACATTTGAAGTAAGAAACAA 428397 Query 48579 CTAGACATTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAAC 48638 ||| ||||| || | ||| |||||||| || | || |||| |||||| | ||| Sbjct 428396 CTACTCATTTAGGGCTTGGGAGTACCTGAATTGAAAAGAGTAGGAGTAGCATGAGTGAAC 428337 Query 48639 CA--TTTCTCTGATAACAATTTATATGTTTCAATAACAGAATCTATATCCCATTGATGTA 48696 || |||| || || || ||||| || | || || | ||| | | ||| | Sbjct 428336 CACTTTTCACTCAT--TAAATTATAAGTACGGAAGGCACTTTCCAAATCTCTCTTATGAA 428279 Query 48697 TACCTATAGATACACGCATTAACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTT 48756 |||| ||||| || | ||||||||| ||||||||||||||| ||||||| ||| | || Sbjct 428278 TACCAATAGAAACTCTCATTAACATTTATTGAGGTCTTTCAGCAATTTTACCATTCAATT 428219 Query 48757 TCAAAAGATA 48766 | |||||||| Sbjct 428218 TTAAAAGATA 428209 Score = 134 bits (148), Expect = 2e-26 Identities = 267/387 (69%), Gaps = 9/387 (2%) Strand=Plus/Minus Query 47056 CATAGAAATGCATACTAGTTAAT-TTAGAATAACTAGGTTCTGAAATATGAATATTAAGA 47114 ||||||| |||||| || |||| ||||| || || || || ||||||||||||||| Sbjct 430069 CATAGAAGTGCATAG-AGGTAATCTTAGAGTATGAGGGATCAGAGATATGAATATTAAGA 430011 Query 47115 GATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCCATATCTAAAATAACCCTTTGT 47174 |||| | | |||||||| | || | || | || | || | |||| || |||| Sbjct 430010 GATTAAGATTAGTCAATAAAAGGACTACGGCCAACAGCGAGATTAATAATAGCCTTTTGA 429951 Query 47175 GGTATCTCCCATACTGTTTTATAAATTTGTTTAATGTCTTCTGGGAGATTAG-TATT--T 47231 | || ||||| ||||||||||| | || ||||| || || || | || || |||| | Sbjct 429950 GATACTTCCCAAACTGTTTTATAGAGTTACTTAATATCATCGGGAATATCAGCTATTGTT 429891 Query 47232 TGAATAGATCCTCCgttttctataattttgttttttaattcatttga--ccaaagttttc 47289 |||| ||| || || | | | || ||||| |||| | || |||||| |||| Sbjct 429890 TGAACAGAGCCATTGTAAGCAAGGAGTTAATTTTT-AATTGAAG-GATTCCAAAGATTTC 429833 Query 47290 gttcagttaatgtttttaaAAGATGAGGATTAACAATTTGAAATTCTCCAGATAGTACTC 47349 |||| |||| || | |||||||||||| | | |||||| |||| || |||| Sbjct 429832 TTTCAATTAAATCTTAAACAAGATGAGGATTGATACAAACAAATTCACCAGCAAGGACTC 429773 Query 47350 TACGGCTATATATATTACTTGTATATGGTTCTATAGATTCATTATTTCCAAAAATTTGAG 47409 ||||| |||| | ||| ||||| ||||| | ||||| ||| || ||||| | || Sbjct 429772 TACGGGTATAAAGATTGGAAGTATAGGGTTCAAATGATTCGCAATTACCCAAAATCTAAG 429713 Query 47410 CAGTTGATGCTGTAGGCATGGATGCAA 47436 || || || |||||||| | |||| Sbjct 429712 AGGTAGAAGCAGTAGGCATAGGAGCAA 429686 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562106516433000