Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetrahymena_20borealis_20[genbank_20GCA_5F000260095.1_202012-05-01] 325 sequences; 93,506,076 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq28 100 3e-16 >seq28 Length=897071 Score = 100 bits (110), Expect = 3e-16 Identities = 345/532 (65%), Gaps = 11/532 (2%) Strand=Plus/Minus Query 37170 AATAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAG 37229 |||||||| || |||||| || | |||||||||||| || | |||||| || ||| Sbjct 62740 AATAAACAAGCGAAATCAGTGTGGAGGCCTTCATCTCTAGAAATGAGTTCATTGGAGAAG 62681 Query 37230 GTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCAGAA 37289 || || || ||||||||| | || |||| ||| || || || ||| ||| Sbjct 62680 GTCAAACCGGGCATTAAAGAACGCTTCTTAAGCCAGAAGATGGCACAGAAACTACCACTG 62621 Query 37290 AAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAACTATAA 37349 ||||| |||||||| | || ||||| || | || | | | | |||||| | | Sbjct 62620 AAGAATATACCTTCGATGGCAGCAAAAGCAATGAGTCTGGAAGC-AAAGTT--ATCGTTG 62564 Query 37350 TCAGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAAC-ACATTCAATTGTTTCAAT 37408 | | ||||| || | ||| | ||||| |||| ||| | | ||| | Sbjct 62563 TTATTGATCCACTTAAGAGCCCATTGAGCCTTCTTGTTAATGACAGGGACAT-TTTGAGA 62505 Query 37409 TGCTTTTAAGAGAAAGtttttttC---TTCACTATCTGTTATATAAGTATCAATTAGTAA 37465 || || || || || | ||||| |||| || | ||||| || ||||| | | Sbjct 62504 GGCCTTGAAAAGGAATTCCTTTTCAGTTTCA---TCCTTAATATAGGTGTCAATCAAAAG 62448 Query 37466 ACTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGC 37525 || |||||||||| |||||||| || || || | |||||||| || | ||| Sbjct 62447 GGAGTAAGTTTCAGAGTGGATATTTTCCATGGCAATTTAGAAACCATAGAAGGCACGAGC 62388 Query 37526 TTCAGATAATTGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATC 37585 ||| | | ||| || || | || || || | ||||||| || || ||||| Sbjct 62387 TTCGGGGATTTGGACTTCACACATGAATTACTCGGCGAGGTTTTCAAGGACGATACCATC 62328 Query 37586 ACTAGCTGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCATTTGATAATTT 37645 | ||| || ||||||||||| |||||||| || || || | ||| | | | | Sbjct 62327 AGAAGCAGCGAAGAAAGCAAGGACATATTTAATGAAGTGACGTTCGTTGTCAGTAAGACG 62268 Query 37646 TTTCCAATCATTAATATCTTTTGATAAATCAACTTCATCAACGGTCCAAAAA 37697 || |||||| || | ||||| ||||||||| ||| ||| | ||||| ||| Sbjct 62267 TTCCCAATCCTTTAAATCTTGATATAAATCAATTTCGTCAGCAGTCCAGAAA 62216 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592314393713000