Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetrahymena_20borealis_20[genbank_20GCA_5F000260095.1_202012-05-01] 325 sequences; 93,506,076 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq105 152 4e-32 seq77 150 1e-31 seq81 134 1e-26 seq121 131 1e-25 >seq105 Length=326417 Score = 152 bits (168), Expect = 4e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || ||||||| | ||| ||||| ||||||||||||||||||| ||||| || || | | Sbjct 7567 CCACCTCTTAGTCTTAACACTAAGTGAAGGGTAGATTCTTTTTAGATATTATAGTCAGAG 7626 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 |||||||| |||| || | |||||| ||||||||||| | | | || ||| || || Sbjct 7627 ATAGTTCTTCCATCTTCAAGTTGCTTTCCTGCAAATATAAGTCTTTATTAATCAGGAGGG 7686 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || ||||| ||||||||||||| ||| ||| |||| | || |||| | | | Sbjct 7687 ATACCTTCCTTATCTTGAATTTAAGTTTTAACATTTTCAATGGTATCAGCGGAATTAATA 7746 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 |||||||||| || || || || | |||||||||||| |||| ||| Sbjct 7747 TCAAGAGTGATAGTCTTTCCTGTAAGAGTTTTTACAAAAATCTACAT 7793 Score = 134 bits (148), Expect = 1e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 101258 AAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCG 101317 || |||||||| || || |||||||||| ||||| ||||| | ||||||||| |||| Sbjct 8041 AATACTAAATGGAGAGTTGATTCTTTTTAGATATTATAATCAGAGATAGTTCTTCCATCT 8100 Query 101318 TCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCT 101377 || | |||||| |||||||| || | | | || ||| || || || ||||| |||||| Sbjct 8101 TCAAGTTGCTTTCCTGCAAAAATAAGTCTTTATTAATCAGGAGGGATACCTTCCTTATCT 8160 Query 101378 TGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTT 101437 ||||||| ||| ||| |||| | ||| |||| | | | |||||||||| || Sbjct 8161 TGAATTTAAGTTTTAACATTTTCAATAGTATCAGCGGAATTAATGTCAAGAGTGATAGTC 8220 Query 101438 TTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || || | |||||||||||| | || ||| Sbjct 8221 TTTCCTGTAAGAGTTTTTACAAAAACCTACAT 8252 >seq77 Length=437778 Score = 150 bits (166), Expect = 1e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || |||||||| | ||| ||||| ||||| |||||||||||||| |||||||| |||| Sbjct 1695 CCACCTCTTAATCTTAATACTAAGTGAAGAGTAGATTCTTTTTGAATATTGTAGTCGGAA 1754 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | |||||| |||| || | ||| ||||| ||||| || | | | || ||| || ||| Sbjct 1755 AGAGTTCTTCCATCTTCGAGTTGTTTACCAGCAAAAATAAGTCTTTATTAATCAGGAGGA 1814 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || ||||| ||||||| ||| || || ||| |||| | || |||||| | ||| || Sbjct 1815 ATACCTTCCTTATCTTAAATCTTAGCCTTGACATTTTCAATAGAGTCAGAGGCTTCAACA 1874 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATG 101470 || ||||||| || || || || ||||| || || || || | |||| Sbjct 1875 TCGAGAGTGATGGTCTTACCAGTCAAAGTCTTAACGAAAATTTACATG 1922 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 ||||||||||| | || ||||| ||||| |||||||| ||||| |||||||| || | Sbjct 1239 CCTCCTCTTAATCTCAATACTAAGTGAAGAGTAGATTCCTTTTGAATATTGTAGTCAGAA 1298 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | |||||| |||| || | || ||||| || || || | | | || ||| || ||| Sbjct 1299 AGAGTTCTTCCATCTTCAAGTTATTTACCAGCGAAAATGAGTCTTTATTAATCAGGAGGA 1358 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || ||||| ||||||| ||| || || || |||| | || |||||| | ||| || Sbjct 1359 ATACCTTCCTTATCTTAAATCTTAGCCTTGACGTTTTCAATAGAGTCAGAGGCTTCAACA 1418 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || ||||||| ||||| || || || ||||| ||||| || | ||| Sbjct 1419 TCTAGAGTGATTGTTTTACCAGTCAATGTTTTAACAAAGATTTACAT 1465 >seq81 Length=427612 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || |||||||| | || ||||| |||||||||||||| ||||| || |||||||||| Sbjct 245183 CCACCTCTTAATCTCAAGACTAAGTGAAGGGTAGATTCCTTTTGGATGTTGTAATCGGAA 245242 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | |||||| | || || | ||||||||| || || || | | | || |||||| || Sbjct 245243 AGGGTTCTGCCGTCTTCAAGTTGCTTACCAGCGAAGATAAGTCTTTATTAATCGGGGGGG 245302 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || ||||| |||||||| || || || ||| |||| | ||||||||| | ||| || Sbjct 245303 ATACCTTCCTTATCTTGGATCTTGGCCTTGACATTTTCAATAGTGTCAGAGGCTTCAACG 245362 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || | || | || || || |||||||| || || || || | ||| Sbjct 245363 TCTAAGGTAATGGTCTTACCAGTTAAAGTCTTAACGAAAATTTACAT 245409 >seq121 Length=281021 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || ||||| || | | ||||||||||||||| ||||||||| ||||| || || | | Sbjct 224640 CCACCTCTCAATCTAAGAACTAAATGAAGGGTTGATTCTTTTGAGATATTATAGTCAGAG 224699 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 |||||||| |||| || | ||||||||| ||||| || | | | | ||| || || Sbjct 224700 ATAGTTCTTCCATCTTCAAGTTGCTTACCAGCAAAAATGAGTCTTTACTAATCAGGAGGG 224759 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || ||||| ||||||| || || ||| | | |||||| || ||| || | | || Sbjct 224760 ATACCTTCCTTATCTTATATCTTAGTTTTGATATTTTCTATAGAGTCTGATGACTAAACA 224819 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || ||||| || || || || ||||| ||||| |||||||| | ||| Sbjct 224820 TCTAGAGTAACAGTCTTACCAGTTAATGTTTTAACAAATATTTACAT 224866 Score = 129 bits (142), Expect = 5e-25 Identities = 162/222 (73%), Gaps = 8/222 (4%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || ||||||| | ||| ||||| ||||||||||| ||||||| ||||| || || | Sbjct 223678 CCACCTCTTAGCCTTAACACTAAGTGAAGGGTAGAGTCTTTTTAGATATTATAGTCATAG 223737 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 |||||||| |||| || | || |||||| ||||| || | | || ||| || || ||| Sbjct 223738 ATAGTTCTTCCATCCTCTAGTTACTTACCAGCAAAAATAAGTCTCTATTGGTCTGGAGGA 223797 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCA-- 101420 || ||||||||||||| ||| ||| || ||| |||||| || || || |||| Sbjct 223798 ATACCTTCTTTATCTTAAATCTTTGCCTTAACATTTTCTATTGTTTCTGA----TCCATT 223853 Query 101421 --CTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAA 101460 |||||| || | ||||| || || |||||||| | ||| Sbjct 223854 AGTTTCAAGGGTAATGGTTTTACCTGTCAAAGTTTTAATAAA 223895 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396276830366025