Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetrahymena_20borealis_20[genbank_20GCA_5F000260095.1_202012-05-01] 325 sequences; 93,506,076 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq77 102 7e-17 seq81 93.3 4e-14 seq41 87.8 2e-12 seq121 82.4 6e-11 >seq77 Length=437778 Score = 102 bits (112), Expect = 7e-17 Identities = 92/116 (79%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 28668 GATCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGAT 28727 ||| || | |||||||| ||||| || |||||| | |||||| | |||| | |||| Sbjct 1807 GATTAATAAAGACTTATTTTTGCTGGTAAACAACTCGAAGATGGAAGAACTCTTTCCGAC 1748 Query 28728 TATAACATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 || || |||||||||||||||||||| ||| | |||||||||||| |||| || || Sbjct 1747 TACAATATTCAAAAAGAATCTACTCTTCACTTAGTATTAAGATTAAGAGGTGGTAT 1692 >seq81 Length=427612 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 28552 AAATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTT 28611 ||||| |||| || || || || ||||| ||||| ||||||||| || ||| | | Sbjct 245411 AAATGTAAATTTTCGTTAAGACTTTAACTGGTAAGACCATTACCTTAGACGTTGAAGCCT 245352 Query 28612 CAGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATC 28671 | || || | | || ||||| || ||| || || || || | ||| ||| Sbjct 245351 CTGACACTATTGAAAATGTCAAGGCCAAGATCCAAGATAAGGAAGGTATCCCCCCCGATT 245292 Query 28672 AACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATA 28731 || | ||||||||||| || || || ||| | ||||| | ||| | ||||||| | Sbjct 245291 AATAAAGACTTATCTTCGCTGGTAAGCAACTTGAAGACGGCAGAACCCTTTCCGATTACA 245232 Query 28732 ACATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGG 28780 |||| ||||| |||||||| || ||| | || || |||||| |||| || Sbjct 245231 ACATCCAAAAGGAATCTACCCTTCACTTAGTCTTGAGATTAAGAGGTGG 245183 >seq41 Length=642683 Score = 87.8 bits (96), Expect = 2e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 28668 GATCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGAT 28727 ||| |||| ||||||||||| || || || ||| | |||||| | |||| | | || Sbjct 166127 GATTAACAAAGACTTATCTTCGCTGGTAAGCAACTTGAAGATGGCAGAACTCTTTCTGAC 166186 Query 28728 TATAACATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGG 28780 ||||| |||||||| ||||| ||||| ||| | || ||||||||| |||| || Sbjct 166187 TATAATATTCAAAAGGAATCAACTCTTCACTTAGTTTTAAGATTAAGAGGTGG 166239 >seq121 Length=281021 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 |||| || | ||| | ||||| || || ||||||||||||||| ||||| | || Sbjct 223905 AATGTAACTTTTTATTAAAACTTTGACAGGTAAAACCATTACCCTTGAAACTAATGGATC 223846 Query 28613 AGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 ||| || | | || | ||| ||| || || ||||| || | || ||| || Sbjct 223845 AGAAACAATAGAAAATGTTAAGGCAAAGATTTAAGATAAAGAAGGTATTCCTCCAGACCA 223786 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 | |||||||||| ||||| || || || | || ||| | |||||| || ||||| Sbjct 223785 ATAGAGACTTATTTTTGCTGGTAAGTAACTAGAGGATGGAAGAACTATCTATGACTATAA 223726 Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGG 28780 || ||||||| ||||| || ||| | || ||||| || |||| || Sbjct 223725 TATCTAAAAAGACTCTACCCTTCACTTAGTGTTAAGGCTAAGAGGTGG 223678 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425403114998175