Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetrahymena_20borealis_20[genbank_20GCA_5F000260095.1_202012-05-01] 325 sequences; 93,506,076 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq2 141 1e-28 >seq2 Length=2195051 Score = 141 bits (156), Expect = 1e-28 Identities = 369/552 (67%), Gaps = 13/552 (2%) Strand=Plus/Plus Query 75304 GTTCATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCGCAGATGTCCAG 75363 ||||| ||| || || || || || |||||| | ||||| || | || | ||| || Sbjct 428337 GTTCACTCATGCTACTCCTACTCTTTTCAATTCAGGTACTCCCAAGCCCTAAATGAGTAG 428396 Query 75364 TTGCTTCCTTATCGCCAAC--AAGGAGGACTCAATCAACGGTATCTATGGAACTCTTACG 75421 ||| ||| ||| | || ||| || | || || ||||||| |||| ||||||| | Sbjct 428397 TTGTTTC-TTACTTCAAATGTAAGCAG-ATTCCATAGACGGTATTTATGACACTCTTAAG 428454 Query 75422 GAGTGTGCGCAAATCTCAAAGTGGGCTGGGGGTATTGGGATGCACATCCATGATGTGAGA 75481 | ||||| |||||| ||| | || || |||||||| | | | ||| || | ||| Sbjct 428455 CAATGTGCTTTAATCTCTAAGAGTGCAGGTGGTATTGGTCTTTCCGTTCATAATATCAGA 428514 Query 75482 GCCAATAAATCTCGTATTCGGGGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTT 75541 || | | | |||| | || ||||||||| || |||| || |||| ||||| Sbjct 428515 GCTAGAGATAGTTATATTAGAGGTACAAATGGTATTTCTAATGGACTTGTTCCTATGCTC 428574 Query 75542 CGCGTATTTAACGCCACAGCGCGCTATGTAAATCAAGCGGGGCGTC----GCAAGGGGTC 75597 || || || || | || || | ||||| |||||| | || | | | ||||| || Sbjct 428575 CGTGTCTTCAATGATACTGCTAGATATGTTGATCAAG-GTGGTGGCAAGAGAAAGGGTTC 428633 Query 75598 CATCGCGGTCTACTTGGAACCATGGCATGCCGATATCATGGAGTTCCTTGAGTT-ACGAC 75656 | | || || ||||| ||||| |||||| | ||| | | || |||||| |||| | || Sbjct 428634 CTTTGCCGTTTACTTAGAACCTTGGCATTCTGATGTTTTCGACTTCCTTTAGTTGAAGAA 428693 Query 75657 TCAACCAAGGTGACGAAGAGGCTCGGTGTAGAGATCTCTTTTCATCCCTGTGGATTCCAG 75716 || || ||| | ||||| | ||||||| | || | | || |||||||| | Sbjct 428694 G-AATCACGGTAAGGAAGAATAAAGAGCTAGAGATTTATTCTTTGCACTTTGGATTCCCG 428752 Query 75717 ACCTTTTCATGAAGCGGGTTGAGGAGGGTGGTCAATGGTCTCTTTTCTGTCC-AGACAAG 75775 | |||||||||||| | || | | ||| ||||| ||||| | ||||| | || Sbjct 428753 ATCTTTTCATGAAGAGAGTCATTGCTGATGGAAAATGGACTCTTATGTGTCCTAATGAAT 428812 Query 75776 GCACCAGGTCTCTCCGACGCGGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTATGAA 75835 || || || || | || | |||||| || |||||||| || || || || |||||| Sbjct 428813 GC-CCTGGACTTCCTGATGTTTGGGGTGATGAATTTGAAGCTCTTTATACTAAATATGAA 428871 Query 75836 GAGGAGGGTAGA 75847 | || |||||| Sbjct 428872 AATGAAGGTAGA 428883 Score = 98.7 bits (108), Expect = 1e-15 Identities = 160/230 (70%), Gaps = 3/230 (1%) Strand=Plus/Plus Query 75905 GAGACTGGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAG 75964 || || || || || || ||||| |||||||||||||| |||| ||| || ||| | Sbjct 429002 GAAACGGGCACTCCCTACATGCTCTACAAGGATGCTTGCAACAGAAAGTCAAATCAATAA 429061 Query 75965 AATTTGGGAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAG 76024 || | || ||||| || || || || || ||||| |||||| | || ||||| | Sbjct 429062 AACCTAGGTACAATTAAAAGTTCTAACCTCTGCACTGAAATTGTTGAATACACTGCCCCT 429121 Query 76025 GATGAGACGGCTGTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGTCAATGAAGAG 76084 |||||| || ||||||||||| || || ||| | ||| || | ||| || ||| Sbjct 429122 GATGAGGTTGCAGTTTGCAATTTAGCTTCTATCTCTCTTGTTAAATTTGTTAAGGAA--- 429178 Query 76085 ACTCGCACTTTTGATTATGAAAAACTTCATGAAATCACAAAGATTGTTAC 76134 | | | | |||||| |||| ||| ||||||| | ||||| ||||| Sbjct 429179 AATAGAGAATATGATTACCAAAAGCTTTATGAAATTGCTAAGATAGTTAC 429228 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596567176436000