Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetrahymena_20borealis_20[genbank_20GCA_5F000260095.1_202012-05-01] 325 sequences; 93,506,076 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq105 178 2e-39 seq121 168 1e-36 seq77 129 1e-24 seq24 100 5e-16 seq21 96.9 6e-15 >seq105 Length=326417 Score = 178 bits (196), Expect = 2e-39 Identities = 179/233 (77%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 193128 TATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAG 193187 || |||||||||||||||| ||| || | ||| | ||| | ||||||||||| |||||| Sbjct 8248 TACATACCACCTCTCAATCTAAGAACTAAATGGAGTGTTGATTCTTTAGAAATGTTATAG 8307 Query 193188 TCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCA 193247 || || | ||||| ||| || | || || || |||||||| | ||| | || |||| Sbjct 8308 TCAGAGATAGTTCTTCCATCATCGAGTTACTTACCAGCAAAAATAAGTCTTTATTAATCA 8367 Query 193248 GGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGAC 193307 ||||| || ||||| ||||||| ||| || ||||| |||||| |||| || |||||| Sbjct 8368 GGAGGGATACCTTCCTTATCTTATATCTTAGTTTTAATATTTTCTATAGAGTCTGAAGAC 8427 Query 193308 TCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 | || |||||||| ||||| || || |||| ||||| |||||||||| ||| Sbjct 8428 TAGACATCTAGAGTAATAGTCTTTCCAGTTAATGTTTTAACAAATATTTACAT 8480 Score = 132 bits (146), Expect = 9e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 193133 ACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGA 193192 ||||||||| | || | || | || | |||| ||||| | ||||||||||| || Sbjct 7566 ACCACCTCTTAGTCTTAACACTAAGTGAAGGGTAGATTCTTTTTAGATATTATAGTCAGA 7625 Query 193193 TAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGG 193252 | ||||| ||| || | ||| ||||| ||||| || | ||| | || ||||||||| Sbjct 7626 GATAGTTCTTCCATCTTCAAGTTGCTTTCCTGCAAATATAAGTCTTTATTAATCAGGAGG 7685 Query 193253 TATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAAC 193312 || ||||| |||||||| |||| ||||| | |||| ||| ||||| | || | || Sbjct 7686 GATACCTTCCTTATCTTGAATTTAAGTTTTAACATTTTCAATGGTATCAGCGGAATTAAT 7745 Query 193313 TTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || ||||| ||||| || ||||| || ||||||||||| || | ||| Sbjct 7746 ATCAAGAGTGATAGTCTTTCCTGTAAGAGTTTTTACAAAAATCTACAT 7793 Score = 131 bits (144), Expect = 3e-25 Identities = 138/182 (76%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 193170 TCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAA 193229 ||||| | |||||||| || || | ||||| ||| || | ||| ||||| |||||| Sbjct 8062 TCTTTTTAGATATTATAATCAGAGATAGTTCTTCCATCTTCAAGTTGCTTTCCTGCAAAA 8121 Query 193230 ATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTT 193289 || | ||| | || ||||||||| || ||||| |||||||| |||| ||||| | |||| Sbjct 8122 ATAAGTCTTTATTAATCAGGAGGGATACCTTCCTTATCTTGAATTTAAGTTTTAACATTT 8181 Query 193290 AAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACA 193349 ||||||||| | || | || || ||||| ||||| || ||||| || ||||||||| Sbjct 8182 TCAATAGTATCAGCGGAATTAATGTCAAGAGTGATAGTCTTTCCTGTAAGAGTTTTTACA 8241 Query 193350 AA 193351 || Sbjct 8242 AA 8243 >seq121 Length=281021 Score = 168 bits (186), Expect = 1e-36 Identities = 179/236 (76%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 || || |||||||||||||||| ||| || | ||| | || | ||||| || |||||| Sbjct 224631 ATCTACATACCACCTCTCAATCTAAGAACTAAATGAAGGGTTGATTCTTTTGAGATATTA 224690 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 ||||| || | ||||| ||| || | ||| || || |||||||| | ||| | | | Sbjct 224691 TAGTCAGAGATAGTTCTTCCATCTTCAAGTTGCTTACCAGCAAAAATGAGTCTTTACTAA 224750 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 |||||||| || ||||| ||||||| ||| || ||||| |||||| |||| || || Sbjct 224751 TCAGGAGGGATACCTTCCTTATCTTATATCTTAGTTTTGATATTTTCTATAGAGTCTGAT 224810 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 |||| ||| |||||||| | ||| ||||| |||| ||||| |||||||||| ||| Sbjct 224811 GACTAAACATCTAGAGTAACAGTCTTACCAGTTAATGTTTTAACAAATATTTACAT 224866 Score = 91.5 bits (100), Expect = 3e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 193164 GTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCG 193223 |||| ||||| | ||||||||||| | | ||||| ||| |||| || || || Sbjct 223708 GTAGAGTCTTTTTAGATATTATAGTCATAGATAGTTCTTCCATCCTCTAGTTACTTACCA 223767 Query 193224 GCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTT 193283 |||||||| | ||||| ||| || ||||| || ||||||||||||| || || | || Sbjct 223768 GCAAAAATAAGTCTCTATTGGTCTGGAGGAATACCTTCTTTATCTTAAATCTTTGCCTTA 223827 Query 193284 ATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTT 193343 | |||| || || || || | | ||| || || || ||||||||||| | ||| Sbjct 223828 ACATTTTCTATTGTTTCTGATCCATTAGTTTCAAGGGTAATGGTTTTACCTGTCAAAGTT 223887 Query 193344 TTTACAAATATTTGCATT 193361 || | ||| | || |||| Sbjct 223888 TTAATAAAAAGTTACATT 223905 >seq77 Length=437778 Score = 129 bits (142), Expect = 1e-24 Identities = 178/248 (72%), Gaps = 1/248 (0%) Strand=Plus/Plus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||| || ||||||||||| |||| | ||| | || | |||| ||||| |||||| Sbjct 1685 AATCTACATACCACCTCTTAATCTTAATACTAAGTGAAGAGTAGATTCTTTTTGAATATT 1744 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 |||||||| | ||||| ||| || | |||||| || |||||||| | ||| | || Sbjct 1745 GTAGTCGGAAAGAGTTCTTCCATCTTCGAGTTGTTTACCAGCAAAAATAAGTCTTTATTA 1804 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 ||||||||| || ||||| ||||||| || || | || | |||| ||||| || || Sbjct 1805 ATCAGGAGGAATACCTTCCTTATCTTAAATCTTAGCCTTGACATTTTCAATAGAGTCAGA 1864 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT-TT 193362 | ||||| || ||||| || || ||||| || | || || || || |||| ||| | Sbjct 1865 GGCTTCAACATCGAGAGTGATGGTCTTACCAGTCAAAGTCTTAACGAAAATTTACATGTG 1924 Query 193363 TATTAGTA 193370 ||||| || Sbjct 1925 TATTATTA 1932 Score = 113 bits (124), Expect = 8e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 ||||| |||||||||||||||| ||| || | || | |||| || || |||||| Sbjct 1458 ATTTACATACCACCTCTCAATCTAAGAACTAAGTGAAGAGTAGATTCCTTTTGAATATTG 1517 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 |||||||| | ||||| ||| || | || ||| || || ||||| | ||| | || | Sbjct 1518 TAGTCGGAAAGAGTTCTTCCATCTTCAAGTTATTTACCAGCGAAAATAAGTCTTTATTAA 1577 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 |||||||| || ||||| ||||||| || || | || | ||| ||||| || || Sbjct 1578 TCAGGAGGAATACCTTCCTTATCTTAAATCTTAGCCTTGACGTTTTCAATAGAGTCAGAG 1637 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGT 193336 | ||||| || ||||| || || ||||| || Sbjct 1638 GCTTCAACATCGAGAGTAATGGTCTTACCAGT 1669 >seq24 Length=964434 Score = 100 bits (110), Expect = 5e-16 Identities = 117/158 (74%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || | ||| || || || || || | ||| |||| ||| || || || ||||| || Sbjct 626670 TCTTCAAGTTGCTTACCAGCGAAGATAAGTCTTTGTTAATCGGGGGGGATACCTTCCTTG 626611 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 ||||| || || | || | ||| |||||||||||||| ||||| || | ||| || Sbjct 626610 TCTTGGATCTTAGCCTTGACGTTTTCAATAGTATCGGAAGCTTCAACGTCCAAAGTAATG 626551 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 |||||||| || || ||||| || || ||||||||||| Sbjct 626550 GTTTTACCAGTGAGGGTTTTAACGAAAATTTGCATTTT 626513 >seq21 Length=988075 Score = 96.9 bits (106), Expect = 6e-15 Identities = 165/236 (70%), Gaps = 4/236 (2%) Strand=Plus/Plus Query 193134 CCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGAT 193193 || |||||||||| ||||| | |||||| |||| ||| | |||| ||| || Sbjct 18768 CCTCCTCTCAATCTTAGTACTAAATGCAAAGTAGATTCTGGCTATATATAATATTCTCTA 18827 Query 193194 AACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGT 193253 || | | | ||| || || | || |||||||| | ||| | ||| || |||||| Sbjct 18828 AATGGTTTGTTATCAAATAGTTATGAACCAGCAAAAATAAGTCTTTATTGGTCTGGAGGT 18887 Query 193254 ATTCCTTCTTTATCTTGTATTTTGGTTT--TTATATTTAAAATAGTATCGGAAGACTCAA 193311 |||||||||||||||| ||||| ||| ||| || |||||||| | || | Sbjct 18888 ATTCCTTCTTTATCTTAAATTTTATTTTAAATATCTTAAAAATAGT-CCTCTTTAC-GAG 18945 Query 193312 CTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTTATTA 193367 | |||| ||| || ||||| || |||| ||||| |||||||| | ||||| |||| Sbjct 18946 CATCTAAAGTAATTGTTTTTCCAGTTAAGGTTTTAACAAATATCTACATTTCATTA 19001 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899650745154000