Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetrahymena_20borealis_20[genbank_20GCA_5F000260095.1_202012-05-01] 325 sequences; 93,506,076 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq121 141 1e-28 seq105 140 5e-28 seq77 140 5e-28 seq81 127 3e-24 seq21 122 1e-22 seq24 109 8e-19 seq41 91.5 2e-13 >seq121 Length=281021 Score = 141 bits (156), Expect = 1e-28 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||| |||||||| |||||||||| ||||| || ||| |||| |||| || | || Sbjct 224866 ATGTAAATATTTGTTAAAACATTAACTGGTAAGACTGTTACTCTAGATGTTTAGTCATCA 224807 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || ||| ||| | |||| ||| ||| ||||||| ||||| || ||||| || | Sbjct 224806 GACTCTATAGAAAATATCAAAACTAAGATATAAGATAAGGAAGGTATCCCTCCTGATTAG 224747 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||||| | |||| ||| |||||||| || |||||| |||||| | || || |||||| Sbjct 224746 TAAAGACTCATTTTTGCTGGTAAGCAACTTGAAGATGGAAGAACTATCTCTGACTATAAT 224687 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 || || ||||| | || ||||||||||| | ||||| ||||| ||| Sbjct 224686 ATCTCAAAAGAATCAACCCTTCATTTAGTTCTTAGATTGAGAGGTGGT 224639 Score = 129 bits (142), Expect = 9e-25 Identities = 177/245 (72%), Gaps = 2/245 (1%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 |||| || | ||||||||||| ||||| || ||||| ||||| | ||| | | || Sbjct 223905 AATGTAACTTTTTATTAAAACTTTGACAGGTAAAACCATTACCCTTGAAACTAATGGATC 223846 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 || | || ||| || || || || ||||||||||||| || |||||||| || Sbjct 223845 AGAAACAATAGAAAATGTTAAGGCAAAGATTTAAGATAAAGAAGGTATTCCTCCAGACCA 223786 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 | | ||| | |||| ||| |||||| | || || ||| |||||| | | || ||||| Sbjct 223785 ATAGAGACTTATTTTTGCTGGTAAGTAACTAGAGGATGGAAGAACTATCTATGACTATAA 223726 Query 156002 TATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGG-TG-TAAAATTG 156059 ||| | ||||| | || ||||| ||||||||||| ||||||| || || || ||||| Sbjct 223725 TATCTAAAAAGACTCTACCCTTCACTTAGTGTTAAGGCTAAGAGGTGGCTGTTATAATTG 223666 Query 156060 AATAA 156064 ||||| Sbjct 223665 AATAA 223661 >seq105 Length=326417 Score = 140 bits (154), Expect = 5e-28 Identities = 178/244 (73%), Gaps = 2/244 (1%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||| | || ||| | ||||| | || ||||| ||||| || | || | | || Sbjct 7793 ATGTAGATTTTTGTAAAAACTCTTACAGGAAAGACTATCACTCTTGATATTAATTCCGCT 7734 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| ||| || |||| | |||| |||||||| ||||| || ||||| || || Sbjct 7733 GATACCATTGAAAATGTTAAAACTTAAATTCAAGATAAGGAAGGTATCCCTCCTGATTAA 7674 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||||| | || | ||| || ||||| || |||||| |||||| | || || |||||| Sbjct 7673 TAAAGACTTATATTTGCAGGAAAGCAACTTGAAGATGGAAGAACTATCTCTGACTATAAT 7614 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGTG--TAAAATTGA 156060 || | ||||| | || ||||| |||||||||||| ||||||| |||| ||||||||| Sbjct 7613 ATCTAAAAAGAATCTACCCTTCACTTAGTGTTAAGACTAAGAGGTGGTGGTTAAAATTGA 7554 Query 156061 ATAA 156064 |||| Sbjct 7553 ATAA 7550 Score = 111 bits (122), Expect = 2e-19 Identities = 117/154 (76%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 155881 CTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAAC 155940 |||||| |||| ||| || |||| | |||| |||||||| ||||| || ||||| || Sbjct 8194 CTGATACTATTGAAAATGTTAAAACTTAAATTCAAGATAAGGAAGGTATCCCTCCTGATT 8135 Query 155941 AACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATA 156000 || ||||| | |||| ||| || ||||| || |||||| |||||| | || ||||||| Sbjct 8134 AATAAAGACTTATTTTTGCAGGAAAGCAACTTGAAGATGGAAGAACTATCTCTGATTATA 8075 Query 156001 ATATATCCAAAGAGGCGACGCTTCATTTAGTGTT 156034 |||| | ||||| | || || |||||||| || Sbjct 8074 ATATCTAAAAAGAATCAACTCTCCATTTAGTATT 8041 >seq77 Length=437778 Score = 140 bits (154), Expect = 5e-28 Identities = 170/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||| |||| ||| |||||||||||||||| ||||| || || |||| || |||| ||| Sbjct 1465 ATGTAAATCTTTGTTAAAACATTGACTGGTAAAACAATCACTCTAGATGTTGAAGCCTCT 1406 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || |||| |||||| || ||| || ||||||| ||||| || ||||| || || Sbjct 1405 GACTCTATTGAAAACGTCAAGGCTAAGATTTAAGATAAGGAAGGTATTCCTCCTGATTAA 1346 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||||| | |||| || ||||| | || |||||| |||||| | || || || ||| Sbjct 1345 TAAAGACTCATTTTCGCTGGTAAATAACTTGAAGATGGAAGAACTCTTTCTGACTACAAT 1286 Query 156003 ATATCCAAAG-AGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 || || |||| | | || ||||| ||||| || ||||||||||| ||| Sbjct 1285 AT-TCAAAAGGAATCTACTCTTCACTTAGTATTGAGATTAAGAGGAGGT 1238 Score = 134 bits (148), Expect = 2e-26 Identities = 172/236 (73%), Gaps = 1/236 (0%) Strand=Plus/Minus Query 155816 TAATAAA-ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCG 155874 ||||| | ||| |||| || |||| || |||||||| || || || || | || || | Sbjct 1929 TAATACACATGTAAATTTTCGTTAAGACTTTGACTGGTAAGACCATCACTCTCGATGTTG 1870 Query 155875 AAGATTCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTC 155934 ||| ||||| |||| ||| || || ||| || ||||||| ||||| || |||| Sbjct 1869 AAGCCTCTGACTCTATTGAAAATGTCAAGGCTAAGATTTAAGATAAGGAAGGTATTCCTC 1810 Query 155935 CAGAACAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAG 155994 | || || ||||| | |||| ||| ||||| || ||||||||| |||||| | || | Sbjct 1809 CTGATTAATAAAGACTTATTTTTGCTGGTAAACAACTCGAAGATGGAAGAACTCTTTCCG 1750 Query 155995 ATTATAATATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 | || ||||| ||||| | || ||||| ||||| |||||||||||||| ||| Sbjct 1749 ACTACAATATTCAAAAAGAATCTACTCTTCACTTAGTATTAAGATTAAGAGGTGGT 1694 >seq81 Length=427612 Score = 127 bits (140), Expect = 3e-24 Identities = 169/233 (73%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 155821 AAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATT 155880 ||||| |||| || |||| || || ||||| || || ||||| ||||| || |||| | Sbjct 245411 AAATGTAAATTTTCGTTAAGACTTTAACTGGTAAGACCATTACCTTAGACGTTGAAGCCT 245352 Query 155881 CTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAAC 155940 |||| | |||| ||| || || || || |||||||| ||||| || || || || Sbjct 245351 CTGACACTATTGAAAATGTCAAGGCCAAGATCCAAGATAAGGAAGGTATCCCCCCCGATT 245292 Query 155941 AACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATA 156000 || ||||| | || | || |||||||| || ||||| |||||| | || ||||| | Sbjct 245291 AATAAAGACTTATCTTCGCTGGTAAGCAACTTGAAGACGGCAGAACCCTTTCCGATTACA 245232 Query 156001 ATATATCCAAA--GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGTG 156051 | || ||||| || | || ||||| ||||| || ||||||||||| |||| Sbjct 245231 ACAT--CCAAAAGGAATCTACCCTTCACTTAGTCTTGAGATTAAGAGGTGGTG 245181 >seq21 Length=988075 Score = 122 bits (134), Expect = 1e-22 Identities = 171/237 (72%), Gaps = 6/237 (3%) Strand=Plus/Minus Query 155816 TAATAAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAG-TCG 155874 |||| ||||| | |||||| ||||||| || ||||||||||| ||||| ||||| | ||| Sbjct 19001 TAATGAAATGTAGATATTTGTTAAAACCTTAACTGGAAAAACAATTACTTTAGATGCTCG 18942 Query 155875 --AAGATTCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACC 155932 |||| || || ||| | | | |||||||||| ||||||||||||| ||||| Sbjct 18941 TAAAGAG---GACTATTTTTAAGATATTTAAAATAAAATTTAAGATAAAGAAGGAATACC 18885 Query 155933 TCCAGAACAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATC 155992 |||||| ||| ||||| | |||| ||| ||| | || |||| || | | || Sbjct 18884 TCCAGACCAATAAAGACTTATTTTTGCTGGTTCATAACTATTTGATAACAAACCATTTAG 18825 Query 155993 AGATTATAATATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGG 156049 ||| ||| |||||| ||| | || | |||||||| ||||||| ||||| || Sbjct 18824 AGAATATTATATATAGCCAGAATCTACTTTGCATTTAGTACTAAGATTGAGAGGAGG 18768 >seq24 Length=964434 Score = 109 bits (120), Expect = 8e-19 Identities = 119/158 (75%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879 ||||||||||| || ||||||| | ||||| ||||| ||||| || || || |||| | Sbjct 626513 AAAATGCAAATTTTCGTTAAAACCCTCACTGGTAAAACCATTACTTTGGACGTTGAAGCT 626572 Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939 || |||| |||| |||||| || ||| || ||||| || ||||| || || || || Sbjct 626573 TCCGATACTATTGAAAACGTCAAGGCTAAGATCCAAGACAAGGAAGGTATCCCCCCCGAT 626632 Query 155940 CAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGA 155977 |||||||| | || | || |||||||| || ||||| Sbjct 626633 TAACAAAGACTTATCTTCGCTGGTAAGCAACTTGAAGA 626670 >seq41 Length=642683 Score = 91.5 bits (100), Expect = 2e-13 Identities = 99/129 (77%), Gaps = 2/129 (2%) Strand=Plus/Plus Query 155922 GAAGGCATACCTCCAGAACAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACC 155981 ||||| || || || || |||||||| | || | || |||||||| || |||||| | Sbjct 166112 GAAGGTATTCCCCCTGATTAACAAAGACTTATCTTCGCTGGTAAGCAACTTGAAGATGGC 166171 Query 155982 AGAACTTTATCAGATTATAATATATCCAAAG-AGGCGACGCTTCATTTAGTGTTAAGATT 156040 |||||| | || || |||||||| || |||| | | || ||||| ||||| |||||||| Sbjct 166172 AGAACTCTTTCTGACTATAATAT-TCAAAAGGAATCAACTCTTCACTTAGTTTTAAGATT 166230 Query 156041 AAGAGGCGG 156049 |||||| || Sbjct 166231 AAGAGGTGG 166239 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731869026770000