Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetrahymena_20borealis_20[genbank_20GCA_5F000260095.1_202012-05-01] 325 sequences; 93,506,076 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq121 167 5e-36 seq105 167 5e-36 seq77 138 2e-27 seq81 104 5e-17 seq24 100 6e-16 seq135 84.2 4e-11 >seq121 Length=281021 Score = 167 bits (184), Expect = 5e-36 Identities = 175/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||||||||| | | | |||||||| | || | ||||| ||||||||||| ||| Sbjct 224637 ATACCACCTCTCAATCTAAGAACTAAATGAAGGGTTGATTCTTTTGAGATATTATAGTCA 224696 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | |||| | |||| || | ||| ||||||||||| || | ||| | | |||||| Sbjct 224697 GAGATAGTTCTTCCATCTTCAAGTTGCTTACCAGCAAAAATGAGTCTTTACTAATCAGGA 224756 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| ||||||| ||| ||| |||| | ||| |||||| ||||| || | Sbjct 224757 GGGATACCTTCCTTATCTTATATCTTAGTTTTGATATTTTCTATAGAGTCTGATGACTAA 224816 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || |||||||||| || ||||||||||||||||||| |||||| | ||| Sbjct 224817 ACATCTAGAGTAACAGTCTTACCAGTTAATGTTTTAACAAATATTTACAT 224866 Score = 127 bits (140), Expect = 4e-24 Identities = 161/219 (74%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGAT 192369 |||||||| || | ||| ||||| || | |||| ||||| |||||||||| ||| | Sbjct 223678 CCACCTCTTAGCCTTAACACTAAGTGAAGGGTAGAGTCTTTTTAGATATTATAGTCATAG 223737 Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429 | |||| | |||| || | || ||||||||||| || | ||||| ||| || || || Sbjct 223738 ATAGTTCTTCCATCCTCTAGTTACTTACCAGCAAAAATAAGTCTCTATTGGTCTGGAGGA 223797 Query 192430 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGA-CGATTCTAC 192488 || ||||||||||||| || || || ||||| ||| | ||||| | ||| Sbjct 223798 ATACCTTCTTTATCTTAAATCTTTGCCTTAACATTTTCTATTGTTTCTGATCCATT-AGT 223856 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAA 192527 ||| || |||||||||||||| || || ||||||||||| Sbjct 223857 TTCAAGGGTAATGGTTTTACCTGTCAAAGTTTTAATAAA 223895 Score = 98.7 bits (108), Expect = 2e-15 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||||||||| | ||||||||||| | |||| ||||| |||||||||||||| Sbjct 223903 ATTCCACCTCTAAGCCTCAATACTAAATGGATGGTAGATTCTTTTTAGATATTATAATCA 223962 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 |||| |||| | |||| || | || ||||||||||| || | ||| | || |||||| Sbjct 223963 GATATAGTTCTTCCATCTTCTAGTTACTTACCAGCAAAAATGAGTCTTTATTAATCAGGA 224022 Query 192427 GG 192428 || Sbjct 224023 GG 224024 >seq105 Length=326417 Score = 167 bits (184), Expect = 5e-36 Identities = 175/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||||||||| | | | |||||||| | || | |||||||| || ||||| ||| Sbjct 8251 ATACCACCTCTCAATCTAAGAACTAAATGGAGTGTTGATTCTTTAGAAATGTTATAGTCA 8310 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | |||| | ||||||| | || ||||||||||| || | ||| | || |||||| Sbjct 8311 GAGATAGTTCTTCCATCATCGAGTTACTTACCAGCAAAAATAAGTCTTTATTAATCAGGA 8370 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| ||||||| ||| ||| |||| | ||| |||||| ||||| || | Sbjct 8371 GGGATACCTTCCTTATCTTATATCTTAGTTTTAATATTTTCTATAGAGTCTGAAGACTAG 8430 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || ||||||||||| || || |||||||||||||||| |||||| | ||| Sbjct 8431 ACATCTAGAGTAATAGTCTTTCCAGTTAATGTTTTAACAAATATTTACAT 8480 Score = 116 bits (128), Expect = 7e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 192325 AATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGATAATGTTCGTTCATCA 192384 ||||||||||| | ||| | ||||| |||||||||||||||| | |||| | |||| Sbjct 8041 AATACTAAATGGAGAGTTGATTCTTTTTAGATATTATAATCAGAGATAGTTCTTCCATCT 8100 Query 192385 TCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCT 192444 || | ||| || || ||||| || | ||| | || |||||| || || ||||| |||||| Sbjct 8101 TCAAGTTGCTTTCCTGCAAAAATAAGTCTTTATTAATCAGGAGGGATACCTTCCTTATCT 8160 Query 192445 TGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTT 192504 || |||| | |||| ||||| |||| ||| | || | | || ||||| || || Sbjct 8161 TGAATTTAAGTTTTAACATTTTCAATAGTATCAGCGGAATTAATGTCAAGAGTGATAGTC 8220 Query 192505 TTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || | ||||| | ||| | || ||| Sbjct 8221 TTTCCTGTAAGAGTTTTTACAAAAACCTACAT 8252 >seq77 Length=437778 Score = 138 bits (152), Expect = 2e-27 Identities = 174/238 (73%), Gaps = 1/238 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||||||||| | | ||||||||| || | ||||| ||||| ||||| || || Sbjct 1692 ATACCACCTCTTAATCTTAATACTAAGTGAAGAGTAGATTCTTTTTGAATATTGTAGTCG 1751 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | |||| | |||| || | ||||||||||||||| || | ||| | || |||||| Sbjct 1752 GAAAGAGTTCTTCCATCTTCGAGTTGTTTACCAGCAAAAATAAGTCTTTATTAATCAGGA 1811 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| ||||||| || ||| || ||||| ||||| || || | ||| Sbjct 1812 GGAATACCTTCCTTATCTTAAATCTTAGCCTTGACATTTTCAATAGAGTCAGAGGCTTCA 1871 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT-TTTATTA 192543 || || ||||| ||||| |||||||| || || |||| || || | ||| | ||||| Sbjct 1872 ACATCGAGAGTGATGGTCTTACCAGTCAAAGTCTTAACGAAAATTTACATGTGTATTA 1929 Score = 131 bits (144), Expect = 3e-25 Identities = 168/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAG 192367 ||| ||||| | | |||||||| || | ||||| || ||| || ||||| || |||| Sbjct 1238 ACCTCCTCTTAATCTCAATACTAAGTGAAGAGTAGATTCCTTTTGA-ATATTGTAGTCAG 1296 Query 192368 ATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTG 192427 | | |||| | |||| || | || ||||||||| || || | ||| | || |||||| | Sbjct 1297 AAAGAGTTCTTCCATCTTCAAGTTATTTACCAGCGAAAATGAGTCTTTATTAATCAGGAG 1356 Query 192428 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTA 192487 | || ||||| ||||||| || ||| || || || ||||| || || | ||| | Sbjct 1357 GAATACCTTCCTTATCTTAAATCTTAGCCTTGACGTTTTCAATAGAGTCAGAGGCTTCAA 1416 Query 192488 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 | |||||||| || ||||||||||| |||||||||| ||| || | ||| Sbjct 1417 CATCTAGAGTGATTGTTTTACCAGTCAATGTTTTAACAAAGATTTACAT 1465 Score = 122 bits (134), Expect = 2e-22 Identities = 167/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCT-CTTTAGAGATATTATAATC 192365 ||||||||||| | | | ||||| || | ||||| | |||| || ||||| || || Sbjct 1464 ATACCACCTCTCAATCTAAGAACTAAGTGAAGAGTAGATTCCTTTTGA-ATATTGTAGTC 1522 Query 192366 AGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGG 192425 || | |||| | |||| || | || ||||||||| || || | ||| | || |||||| Sbjct 1523 GGAAAGAGTTCTTCCATCTTCAAGTTATTTACCAGCGAAAATAAGTCTTTATTAATCAGG 1582 Query 192426 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTC 192485 || || ||||| ||||||| || ||| || || || ||||| || || | ||| Sbjct 1583 AGGAATACCTTCCTTATCTTAAATCTTAGCCTTGACGTTTTCAATAGAGTCAGAGGCTTC 1642 Query 192486 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || ||||||||||| |||||||| || || ||||| || |||| ||| Sbjct 1643 AACATCGAGAGTAATGGTCTTACCAGTCAAAGTCTTAATGAAAATCTACAT 1693 >seq81 Length=427612 Score = 104 bits (114), Expect = 5e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 ||||||||| | | || ||||| || | |||| || || ||| || ||||| || Sbjct 245182 ACCACCTCTTAATCTCAAGACTAAGTGAAGGGTAGATTCCTTTTGGATGTTGTAATCGGA 245241 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 | |||| | || || | ||| |||||||| ||||| | ||| | || ||| || || Sbjct 245242 AAGGGTTCTGCCGTCTTCAAGTTGCTTACCAGCGAAGATAAGTCTTTATTAATCGGGGGG 245301 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 || ||||| |||||||| || || || ||||| |||| || || | ||| || Sbjct 245302 GATACCTTCCTTATCTTGGATCTTGGCCTTGACATTTTCAATAGTGTCAGAGGCTTCAAC 245361 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTT 192538 |||| |||||||| ||||||||||| || |||| || || | ||||| Sbjct 245362 GTCTAAGGTAATGGTCTTACCAGTTAAAGTCTTAACGAAAATTTACATTT 245411 >seq24 Length=964434 Score = 100 bits (110), Expect = 6e-16 Identities = 117/158 (74%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 192382 TCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTA 192441 || || | ||| |||||||| ||||| | ||| |||| ||| || || || ||||| || Sbjct 626670 TCTTCAAGTTGCTTACCAGCGAAGATAAGTCTTTGTTAATCGGGGGGGATACCTTCCTTG 626611 Query 192442 TCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATG 192501 ||||| || ||| || || || |||| ||| || | ||| || || | ||||||| Sbjct 626610 TCTTGGATCTTAGCCTTGACGTTTTCAATAGTATCGGAAGCTTCAACGTCCAAAGTAATG 626551 Query 192502 GTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 ||||||||||| | ||||||| || || |||||||| Sbjct 626550 GTTTTACCAGTGAGGGTTTTAACGAAAATTTGCATTTT 626513 >seq135 Length=235529 Score = 84.2 bits (92), Expect = 4e-11 Identities = 127/178 (71%), Gaps = 6/178 (3%) Strand=Plus/Plus Query 192271 AATTAATAGATATAGAGTATACTTTTTAGTTTAATAAT--ACCACCTCTAAGACGTAATA 192328 |||||| |||||| || | ||| | | || ||| | ||||||||| | | ||| | Sbjct 235354 AATTAA-AGATATT---TAAATTTTATTGATTTATATTCAACCACCTCTTAATCTTAAAA 235409 Query 192329 CTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCCA 192388 |||| || | ||| | || || | ||||| || ||||| | |||| | |||| || | Sbjct 235410 CTAAGTGGAGAGTTGATTCCTTTTAAATATTGTAGTCAGAAAGGGTTCTTCCATCTTCAA 235469 Query 192389 ATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTG 192446 || |||||||||||||| | ||| | |||||| || || || ||||| || ||||| Sbjct 235470 GTTACTTACCAGCAAAGATAAGTCTTTATTGATCGGGGGGAATACCTTCCTTGTCTTG 235527 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984475900563750