Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetrahymena_20borealis_20[genbank_20GCA_5F000260095.1_202012-05-01] 325 sequences; 93,506,076 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq105 158 2e-33 seq121 149 1e-30 seq77 143 5e-29 seq21 136 7e-27 seq81 109 1e-18 seq24 104 4e-17 >seq105 Length=326417 Score = 158 bits (174), Expect = 2e-33 Identities = 173/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||||||||| | || | |||||||| | || | ||||||||||| ||||| || Sbjct 8251 ATACCACCTCTCAATCTAAGAACTAAATGGAGTGTTGATTCTTTAGAAATGTTATAGTCA 8310 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | || || | | ||||| | || |||||||||||||| | ||| | || ||||| Sbjct 8311 GAGATAGTTCTTCCATCATCGAGTTACTTACCAGCAAAAATAAGTCTTTATTAATCAGGA 8370 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| ||||||| ||| ||| |||| | ||| ||||| ||||| || | Sbjct 8371 GGGATACCTTCCTTATCTTATATCTTAGTTTTAATATTTTCTATAGAGTCTGAAGACTAG 8430 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || ||||||||||| || || |||||||||||||||| ||||| | ||| Sbjct 8431 ACATCTAGAGTAATAGTCTTTCCAGTTAATGTTTTAACAAATATTTACAT 8480 Score = 104 bits (114), Expect = 4e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 171858 AATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGATAAAGATCGTTCGTCA 171917 ||||||||||| | ||| | ||||| | ||||||||||| || | || || | | || Sbjct 8041 AATACTAAATGGAGAGTTGATTCTTTTTAGATATTATAATCAGAGATAGTTCTTCCATCT 8100 Query 171918 TCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCT 171977 || | ||| || || |||||||| | ||| | || ||||| || || ||||| |||||| Sbjct 8101 TCAAGTTGCTTTCCTGCAAAAATAAGTCTTTATTAATCAGGAGGGATACCTTCCTTATCT 8160 Query 171978 TGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTT 172037 || |||| | |||| ||||| |||||||| | || | | || ||||| || || Sbjct 8161 TGAATTTAAGTTTTAACATTTTCAATAGTATCAGCGGAATTAATGTCAAGAGTGATAGTC 8220 Query 172038 TTACCAGTTAATGTTTT 172054 || || || | ||||| Sbjct 8221 TTTCCTGTAAGAGTTTT 8237 >seq121 Length=281021 Score = 149 bits (164), Expect = 1e-30 Identities = 171/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||||||||| | || | |||||||| | || | ||||| || |||||||| || Sbjct 224637 ATACCACCTCTCAATCTAAGAACTAAATGAAGGGTTGATTCTTTTGAGATATTATAGTCA 224696 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | || || | | || || | ||| |||||||||||||| | ||| | | ||||| Sbjct 224697 GAGATAGTTCTTCCATCTTCAAGTTGCTTACCAGCAAAAATGAGTCTTTACTAATCAGGA 224756 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| ||||||| ||| ||| |||| | ||| ||||| ||||| || | Sbjct 224757 GGGATACCTTCCTTATCTTATATCTTAGTTTTGATATTTTCTATAGAGTCTGATGACTAA 224816 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || |||||||||| || ||||||||||||||||||| ||||| | ||| Sbjct 224817 ACATCTAGAGTAACAGTCTTACCAGTTAATGTTTTAACAAATATTTACAT 224866 Score = 122 bits (134), Expect = 2e-22 Identities = 160/219 (73%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 171843 CCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGAT 171902 |||||||| || | ||| ||||| || | |||| ||||| | |||||||| || | Sbjct 223678 CCACCTCTTAGCCTTAACACTAAGTGAAGGGTAGAGTCTTTTTAGATATTATAGTCATAG 223737 Query 171903 AAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGT 171962 | || || | | || || | || |||||||||||||| | ||||| |||||| || || Sbjct 223738 ATAGTTCTTCCATCCTCTAGTTACTTACCAGCAAAAATAAGTCTCTATTGGTCTGGAGGA 223797 Query 171963 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGA-CGATTCTAC 172021 || ||||||||||||| || || || ||||| ||| || ||||| | ||| Sbjct 223798 ATACCTTCTTTATCTTAAATCTTTGCCTTAACATTTTCTATTGTTTCTGATCCATT-AGT 223856 Query 172022 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAA 172060 ||| || |||||||||||||| || || |||||||| || Sbjct 223857 TTCAAGGGTAATGGTTTTACCTGTCAAAGTTTTAATAAA 223895 Score = 86.0 bits (94), Expect = 1e-11 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||||||||| | ||||||||||| | |||| ||||| | ||||||||||| Sbjct 223903 ATTCCACCTCTAAGCCTCAATACTAAATGGATGGTAGATTCTTTTTAGATATTATAATCA 223962 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 |||| || || | | || || | || |||||||||||||| | ||| | || ||||| Sbjct 223963 GATATAGTTCTTCCATCTTCTAGTTACTTACCAGCAAAAATGAGTCTTTATTAATCAGGA 224022 Query 171960 GG 171961 || Sbjct 224023 GG 224024 >seq77 Length=437778 Score = 143 bits (158), Expect = 5e-29 Identities = 176/239 (74%), Gaps = 1/239 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||||||||| | || ||||||||| || | ||||| ||||| |||||| || || Sbjct 1692 ATACCACCTCTTAATCTTAATACTAAGTGAAGAGTAGATTCTTTTTGAATATTGTAGTCG 1751 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | || || | | || || | |||||||||||||||||| | ||| | || ||||| Sbjct 1752 GAAAGAGTTCTTCCATCTTCGAGTTGTTTACCAGCAAAAATAAGTCTTTATTAATCAGGA 1811 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| ||||||| || ||| || ||||| |||| || || | ||| Sbjct 1812 GGAATACCTTCCTTATCTTAAATCTTAGCCTTGACATTTTCAATAGAGTCAGAGGCTTCA 1871 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT-TTTATTAT 172077 || || ||||| ||||| |||||||| || || |||| ||| || | ||| | |||||| Sbjct 1872 ACATCGAGAGTGATGGTCTTACCAGTCAAAGTCTTAACGAAAATTTACATGTGTATTAT 1930 Score = 122 bits (134), Expect = 2e-22 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||||||||| | || | ||||| || | ||||| || || |||||| || || Sbjct 1464 ATACCACCTCTCAATCTAAGAACTAAGTGAAGAGTAGATTCCTTTTGAATATTGTAGTCG 1523 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | || || | | || || | || ||||||||| ||||| | ||| | || ||||| Sbjct 1524 GAAAGAGTTCTTCCATCTTCAAGTTATTTACCAGCGAAAATAAGTCTTTATTAATCAGGA 1583 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| ||||||| || ||| || || || |||| || || | ||| Sbjct 1584 GGAATACCTTCCTTATCTTAAATCTTAGCCTTGACGTTTTCAATAGAGTCAGAGGCTTCA 1643 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || ||||||||||| |||||||| || || |||||||| |||| ||| Sbjct 1644 ACATCGAGAGTAATGGTCTTACCAGTCAAAGTCTTAATGAAAATCTACAT 1693 Score = 118 bits (130), Expect = 2e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 171842 ACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGA 171901 ||| ||||| | || |||||||| || | ||||| || || |||||| || || || Sbjct 1238 ACCTCCTCTTAATCTCAATACTAAGTGAAGAGTAGATTCCTTTTGAATATTGTAGTCAGA 1297 Query 171902 TAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGG 171961 | || || | | || || | || ||||||||| ||||| | ||| | || ||||| || Sbjct 1298 AAGAGTTCTTCCATCTTCAAGTTATTTACCAGCGAAAATGAGTCTTTATTAATCAGGAGG 1357 Query 171962 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTAC 172021 || ||||| ||||||| || ||| || || || |||| || || | ||| || Sbjct 1358 AATACCTTCCTTATCTTAAATCTTAGCCTTGACGTTTTCAATAGAGTCAGAGGCTTCAAC 1417 Query 172022 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 |||||||| || ||||||||||| |||||||||| || || | ||| Sbjct 1418 ATCTAGAGTGATTGTTTTACCAGTCAATGTTTTAACAAAGATTTACAT 1465 >seq21 Length=988075 Score = 136 bits (150), Expect = 7e-27 Identities = 179/241 (74%), Gaps = 14/241 (6%) Strand=Plus/Plus Query 171843 CCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGAT 171902 || ||||| | || || ||||||||| ||||||| ||| | |||| ||| ||| | Sbjct 18768 CCTCCTCTCAATCTTAGTACTAAATGCAAAGTAGATTCTGGCTATATATAATATTCTC-T 18826 Query 171903 AAAGATCGTTCGTCATCCAATTGTTT---ACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 ||| | ||| || ||| ||| ||| |||||||||||| | ||| | |||||| || Sbjct 18827 AAA--TGGTTTGTTATCAAATAGTTATGAACCAGCAAAAATAAGTCTTTATTGGTCTGGA 18884 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTT--TTACATTAGTTATAGT-ATC-TGACGA 172015 ||||||||||||||||||| |||||||||| || ||| ||||| || | |||| Sbjct 18885 GGTATTCCTTCTTTATCTTAAATTTTATTTTAAATATCTTAAAAATAGTCCTCTTTACGA 18944 Query 172016 TTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTTATT 172075 | |||| |||||| ||||| |||||||| ||||||| ||||||| ||||| ||| Sbjct 18945 ----GCATCTAAAGTAATTGTTTTTCCAGTTAAGGTTTTAACAAATATCTACATTTCATT 19000 Query 172076 A 172076 | Sbjct 19001 A 19001 >seq81 Length=427612 Score = 109 bits (120), Expect = 1e-18 Identities = 168/240 (70%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 171832 GTTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATAT 171891 ||| |||| ||||||||| | || || ||||| || | |||| || || || | Sbjct 245172 GTTCCATACCACCACCTCTTAATCTCAAGACTAAGTGAAGGGTAGATTCCTTTTGGATGT 245231 Query 171892 TATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTT 171951 | ||||| || | | || |||| || | ||| |||||||| || || | ||| | || Sbjct 245232 TGTAATCGGAAAGGGTTCTGCCGTCTTCAAGTTGCTTACCAGCGAAGATAAGTCTTTATT 245291 Query 171952 GGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTG 172011 || || || || ||||| |||||||| || || || ||||| ||||| || | Sbjct 245292 AATCGGGGGGGATACCTTCCTTATCTTGGATCTTGGCCTTGACATTTTCAATAGTGTCAG 245351 Query 172012 ACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTT 172071 | | ||| || |||| |||||||| ||||||||||| || |||| ||| || | ||||| Sbjct 245352 AGGCTTCAACGTCTAAGGTAATGGTCTTACCAGTTAAAGTCTTAACGAAAATTTACATTT 245411 >seq24 Length=964434 Score = 104 bits (114), Expect = 4e-17 Identities = 119/160 (74%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 171913 CGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTT 171972 |||| || | ||| |||||||| || || | ||| |||| || || || || ||||| | Sbjct 626672 CGTCTTCAAGTTGCTTACCAGCGAAGATAAGTCTTTGTTAATCGGGGGGGATACCTTCCT 626613 Query 171973 TATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAA 172032 | ||||| || ||| || || || |||||||| || | ||| || || | ||||| Sbjct 626612 TGTCTTGGATCTTAGCCTTGACGTTTTCAATAGTATCGGAAGCTTCAACGTCCAAAGTAA 626553 Query 172033 TGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 ||||||||||||| | ||||||| ||| || |||||||| Sbjct 626552 TGGTTTTACCAGTGAGGGTTTTAACGAAAATTTGCATTTT 626513 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905132322885000