Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetrahymena_20borealis_20[genbank_20GCA_5F000260095.1_202012-05-01] 325 sequences; 93,506,076 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq28 143 8e-29 seq2 141 3e-28 seq13 118 3e-21 seq122 91.5 4e-13 seq1 87.8 5e-12 seq5 86.0 2e-11 >seq28 Length=897071 Score = 143 bits (158), Expect = 8e-29 Identities = 390/588 (66%), Gaps = 17/588 (3%) Strand=Plus/Plus Query 133076 TTTGTTATGTTCCCAATTAAGGACGACGAGATTTGGCAGATGTATAAAAAACAGCAAGAT 133135 ||||| | ||||| ||||| || || || | ||| | ||||| || ||| | | | | Sbjct 62154 TTTGTCCTCTTCCCCATTAAATACAACAAGGTCTGGGAAATGTACAAGAAAGAACTCGCT 62213 Query 133136 TTATTTTGGACTTCAACTGAAGTAGATTTATCCAAAGACCCAGCCCACTGGGAAGCCCTT 133195 | || |||||| | ||| | ||||||| |||| | | |||||| ||| Sbjct 62214 TCTTTCTGGACTGCTGACGAAATTGATTTATATCAAGATTTAAAGGATTGGGAACGTCTT 62273 Query 133196 ACTGGGGATGAAAAACATTTTATTTC-TATGATTTTAGCGTTTTTTGCTGCGAGTGATGG 133254 |||| | ||| || || ||| |||| || || || || ||||| |||||| Sbjct 62274 ACTGACAACGAACGTCACTTCATTAAATATGTCCTT-GCTTTCTTCGCTGCTTCTGATGG 62332 Query 133255 TATTGTTCTTGAAAATTTAG--GAACACGGTTTATGGGAGAAGTTCAACTGGCCGAAGCC 133312 ||| || |||||||| | | || | || ||| | ||||| ||| | ||||||| Sbjct 62333 TATCGTCCTTGAAAACCTCGCCGAGTAA--TTCATGTGTGAAGTCCAAATCCCCGAAGCT 62390 Query 133313 CGTGCCTTTTATGGGCTACAGATTGCGATGGAAAATATCCATTCTATCACATATTCTACT 133372 |||||||| ||||| | | ||||| |||||||||||||| ||| || || || | Sbjct 62391 CGTGCCTTCTATGGTTTCTAAATTGCCATGGAAAATATCCACTCTGAAACTTACTCCCTT 62450 Query 133373 CTAATTGATACTTACATCAAAGAT---ACCGTCCAGAAGCACAAACTATTCAACGCCATT 133429 | ||||| || || || || ||| || | | ||| | || ||||| ||| | Sbjct 62451 TTGATTGACACCTATATTAAGGATGAAACTG---AAAAGGAATTCCTTTTCAAGGCCTCT 62507 Query 133430 AGCGAATTTCCTTGT-ATTAAAAAGAAATCTGACTGGGCTATTAAATGGATCCAGGACAA 133488 ||| ||| ||| ||||| ||||| || | |||||| |||| |||||| | |||| Sbjct 62508 CAA-AATGTCCCTGTCATTAACAAGAAGGCTCAATGGGCTCTTAAGTGGATCAATAACAA 62566 Query 133489 GCGTGCGAGTTTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAtttttttCAG 133548 | | |||||| | | ||| |||||||||||| | || || || || ||||| Sbjct 62567 CGAT---AACTTTGCTTCCAGACTCATTGCTTTTGCTGCCATCGAAGGTATATTCTTCAG 62623 Query 133549 TGGTGCGTTCTGCTCTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACTGTGTTT 133608 |||| ||||| | || || |||||||| |||||| | | | || || || || Sbjct 62624 TGGTAGTTTCTGTGCCATCTTCTGGCTTAAGAAGCGTTCTTTAATGCCCGGTTTGACCTT 62683 Query 133609 TTCTAACGAACTTATTTCAAGGGACGAGGCACTTCACACCGAATTTGC 133656 || || ||||| ||||| || || || | || ||||| || || || Sbjct 62684 CTCCAATGAACTCATTTCTAGAGATGAAGGCCTCCACACTGATTTCGC 62731 >seq2 Length=2195051 Score = 141 bits (156), Expect = 3e-28 Identities = 369/558 (66%), Gaps = 15/558 (3%) Strand=Plus/Minus Query 155798 TCTGCCTTCCGACTCATATTTCATATACAGCGTTCGGTAATCCTCACCGTAACAATCACT 155857 ||| ||||| |||||||| |||| || | | | || ||||| || |||| Sbjct 428883 TCTACCTTCATTTTCATATTTAGTATAAAGAGCTTCAAATTCATCACCCCAAACATCAGG 428824 Query 155858 CAGTCCAGGGCACTTATCGGGGCAAAACAGCGACCAAATTTTATTACCGATTACACGCTC 155917 ||||||||||| | || || || | || | ||| || || | | || || | || Sbjct 428823 AAGTCCAGGGCATTCATTAGGACACATAAGAGTCCATTTTCCATCAGCAATGACTCTCTT 428764 Query 155918 CATAAATACATCACTCGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGACTCCTCATC 155977 ||| || | ||| ||||| ||| |||| | || || || || | || || | Sbjct 428763 CATGAAAAGATCGGGAATCCAAAGTGCAAAGAATAAATCTCTAGCTCTTTATTCTTCCTT 428704 Query 155978 GCCGTGATTCTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATA 156037 |||||||||||| | || | ||| || || ||||| ||| || || | || Sbjct 428703 ACCGTGATTCTTCTTCAACTAAAGGAAGTCGAAAACATCAGAATGCCAAGGTTCTAAGTA 428644 Query 156038 CATAGCAAAACTACCATTCCTCTTGCCACCC---TGATCTACATACCGAGCAGTCTTATT 156094 | ||||| ||| || ||||||||||| ||||| ||||| | |||||| | ||| Sbjct 428643 AACGGCAAAGGAACCCTTTCTCTTGCCACCACCTTGATCAACATATCTAGCAGTATCATT 428584 Query 156095 GAAGACACCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGA 156154 |||||||| |||||||||| || ||||| ||| | ||||| || || | ||||| | Sbjct 428583 GAAGACACGGAGCATAGGAACAAGTCCATTAGAAATACCATTTGTACCTCTAATAT---A 428527 Query 156155 ACCAGAT---GAGCGAACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAAT 156211 || | | | | | |||||||| || ||||||||||||| | ||||| || Sbjct 428526 ACTATCTCTAGCTCTGATATTATGAACGGAAAGACCAATACCACCTGCACTCTTAGAGAT 428467 Query 156212 TTGAGCGCATTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCATTGATAG 156271 | ||| |||| ||| | ||| | ||||||| || || ||||| ||| |||| || Sbjct 428466 TAAAGCACATTGCTTAAGAGTGTCATAAATACCGTCTATGGAATCTGCTTACATTTGAAG 428407 Query 156272 TAGATAGCACGAACT--TAATTGAGGTCGT-GGTGTTCCAGCGTTGAATAGTGTAGGTGT 156328 || || | |||| | ||| ||| | | || || || | ||||| || ||||| || Sbjct 428406 TA---AGAAACAACTACTCATTTAGGGCTTGGGAGTACCTGAATTGAAAAGAGTAGGAGT 428350 Query 156329 TGCATGAATAAAATACTT 156346 |||||| | || |||| Sbjct 428349 AGCATGAGTGAACCACTT 428332 Score = 95.1 bits (104), Expect = 4e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 155547 TAGTCAAATGTTTTATCCTCATTTACAAACATACCAAGACCAATAGACGCCAGATTACAT 155606 || ||| || | ||| || || ||||| || ||||| ||||| || | ||| || Sbjct 429195 TAATCATATTCTCTATTTTCCTTAACAAATTTAACAAGAGAGATAGAAGCTAAATTGCAA 429136 Query 155607 ACCGCAGTCTCCTTGTCGTCGCTGTATTCTACAATCTCACAGCACAGGTTAGAACTCTTG 155666 || ||| ||| | | | ||||||| ||||| ||| ||| ||||||||||| || Sbjct 429135 ACTGCAACCTCATCAGGGGCAGTGTATTCAACAATTTCAGTGCAGAGGTTAGAACTTTTA 429076 Query 155667 ATGGTGCCTAAATTCTTCTGGTTAGATTTACTGTTACAAGCATCCTTGTATAGAATGTAT 155726 || || |||| || | || || || || ||||| |||||||||||||| || ||||| Sbjct 429075 ATTGTACCTAGGTTTTATTGATTTGACTTTCTGTTGCAAGCATCCTTGTAGAGCATGTAG 429016 Query 155727 GGGGTTCCTGTCTCCAT 155743 || || || || || || Sbjct 429015 GGAGTGCCCGTTTCTAT 428999 >seq13 Length=1112814 Score = 118 bits (130), Expect = 3e-21 Identities = 184/260 (71%), Gaps = 5/260 (2%) Strand=Plus/Plus Query 289021 CtttttttACCA---ACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGT 289077 ||| |||||||| |||| ||||||||| || || ||||| | | | |||| | ||| | Sbjct 76022 CTTCTTTTACCACAAACAGAATCAATTTCATCTATAAAAATGATAGAAGGAGCAGTTTAT 76081 Query 289078 CTCGCAATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACA 289137 || || || |||||||||||| || | || || || | ||||||| ||||||| | Sbjct 76082 CTAGCCTTTTTAAATAATTCTCTCACTCTAGAAGCACCTACACCAACAAACATTTCATCG 76141 Query 289138 AATTCAGAAGCGGATACTTGAATGAATGTTACA-TTTGCTTCGCCTGCTACTGCCCTCGC 289196 ||||| ||| | ||| | ||| || | |||| ||||| || || | || || || Sbjct 76142 AATTCTGAACCAGAT-TTATAATAAAAGGTACAGCCAGCTTCACCAGCAAGAGCTCTTGC 76200 Query 289197 CAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGC 289256 | ||| |||||||| || || |||||||| ||||| || || || || | || || Sbjct 76201 TAAAAGAGTCTTACCAGTACCTGGTGGTCCAATTAATAAAATACCTTTAGGAAGCTTAGC 76260 Query 289257 CCCAGCAGACTTATATTTCT 289276 |||||| | |||||||| Sbjct 76261 TCCAGCATCTTAATATTTCT 76280 >seq122 Length=280157 Score = 91.5 bits (100), Expect = 4e-13 Identities = 176/260 (68%), Gaps = 0/260 (0%) Strand=Plus/Plus Query 60070 ATCATCTTTTAAGTATGTTAAAACCTTGTCGTCAATTTCGGGAAATATAGCCCGAGTAAT 60129 |||||||| |||||| ||||||| | || ||| ||| || || || || | || | Sbjct 100440 ATCATCTTCCAAGTATTTTAAAACATGATCATCATGTTCTGGGAAAATTGCTCTTGTTAC 100499 Query 60130 CTTGGATAATTGTGTGAAAATATACCTCTCGGATGCTGCGTCCTTGCCACCCATAAGACG 60189 || || | ||| |||||||| || | || || ||||| || || ||| Sbjct 100500 TTTACTCAAATTTGTAAAAATATATCTTGCTGAGGCATGTTCCTTACCTCCTTGGTTACG 100559 Query 60190 GGTTCCAAATTGTCCGTTTGGCTGGAATAGATTAATGTTGTTAGAGCCTACGAAATTTTG 60249 | || |||| || | ||| || |||||||| || ||||| || || ||||||| Sbjct 100560 AGAACCGAATTAACCAATAGGCAACAAGAGATTAATATTATTAGAACCCACAAAATTTTA 100619 Query 60250 AGCGAGACCAACAATAGCACCATTTAAACTGGCTTCACCGTGATGATATCCAGAATGTTC 60309 ||| | ||||||||||| | | || | |||||| |||||||| |||| ||||| Sbjct 100620 AGCCATACCAACAATAGTAGAAGCTAGAGACTATTCACCATGATGATAAGCAGAGTGTTC 100679 Query 60310 TGAAACATATCCACTGAATT 60329 | |||||| ||| | |||| Sbjct 100680 AGCAACATAACCAATTAATT 100699 >seq1 Length=3433454 Score = 87.8 bits (96), Expect = 5e-12 Identities = 99/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 448896 GAGGAAATCAAGAAGGCATATAAACGACTCGCAATTAAACATCATCCTGATAAAAATCCA 448955 || || ||||| || ||||||| | || || |||| ||||||||||||||| | Sbjct 637318 GATGAGATCAAAAAAGCATATAGAAAGCTTGCTCTTAAGTGGCATCCTGATAAAAATTAA 637259 Query 448956 GATAATAAAGCAGAGGCAGAGGAGAAATTCAAAGAGATTTCTCAAGCTTATGAAATTGTA 449015 || || || | ||| || |||||||||||||||||| || ||||||||||| || | Sbjct 637258 GACAAAAAGGAAGAAGCTACTGAGAAATTCAAAGAGATTACTGAAGCTTATGAAGTTCTT 637199 Query 449016 ACAAATAAAGAAA 449028 || |||||| || Sbjct 637198 TCAGATAAAGTAA 637186 >seq5 Length=1553084 Score = 86.0 bits (94), Expect = 2e-11 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 408951 TAACTCAGTTGGTTAGAGTGTCGGTCTTATGAGCCGAAAGTCGTGGGTTCGAGTCCCACA 409010 || ||||||||||||||| | ||||||||||||| || |||||||||||||| ||||| Sbjct 757025 TAGCTCAGTTGGTTAGAGCTTTGGTCTTATGAGCCAAAGGTCGTGGGTTCGAGCCCCACC 757084 Query 409011 TAGAACAtttttttA 409025 | || || ||||||| Sbjct 757085 TTGAGCAATTTTTTA 757099 Score = 86.0 bits (94), Expect = 2e-11 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 408951 TAACTCAGTTGGTTAGAGTGTCGGTCTTATGAGCCGAAAGTCGTGGGTTCGAGTCCCACA 409010 || ||||||||||||||| | ||||||||||||| || |||||||||||||| ||||| Sbjct 757300 TAGCTCAGTTGGTTAGAGCTTTGGTCTTATGAGCCAAAGGTCGTGGGTTCGAGCCCCACC 757359 Query 409011 TAGAACAtttttttA 409025 | || || ||||||| Sbjct 757360 TTGAGCAATTTTTTA 757374 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471811471259525