Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetrahymena_20borealis_20[genbank_20GCA_5F000260095.1_202012-05-01] 325 sequences; 93,506,076 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq81 114 1e-20 seq77 107 2e-18 seq24 91.5 1e-13 seq121 87.8 2e-12 >seq81 Length=427612 Score = 114 bits (126), Expect = 1e-20 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||| | || || |||| || |||| ||||| || ||||| | || || |||||| | Sbjct 245409 ATGTAAATTTTCGTTAAGACTTTAACTGGTAAGACCATTACCTTAGACGTTGAAGCCTCT 245350 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | |||| || || ||||||||||| || ||||| || || |||||| || Sbjct 245349 GACACTATTGAAAATGTCAAGGCCAAGATCCAAGATAAGGAAGGTATCCCCCCCGATTAA 245290 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | | ||||| || || || || || || || |||| | | || ||||| ||| Sbjct 245289 TAAAGACTTATCTTCGCTGGTAAGCAACTTGAAGACGGCAGAACCCTTTCCGATTACAAC 245230 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATT 24921 || ||||||||||| || || ||||| || ||| |||| Sbjct 245229 ATCCAAAAGGAATCTACCCTTCACTTAGTCTTGAGATT 245192 >seq77 Length=437778 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||| | |||||| ||||||| | || |||||||| || || || || || |||||| | Sbjct 1465 ATGTAAATCTTTGTTAAAACATTGACTGGTAAAACAATCACTCTAGATGTTGAAGCCTCT 1406 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||| | | |||| || || ||||| |||| || ||||| || ||||| ||| || Sbjct 1405 GACTCTATTGAAAACGTCAAGGCTAAGATTTAAGATAAGGAAGGTATTCCTCCTGATTAA 1346 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | | || || || || ||| | || || ||| |||| | || || || || Sbjct 1345 TAAAGACTCATTTTCGCTGGTAAATAACTTGAAGATGGAAGAACTCTTTCTGACTACAAT 1286 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 |||||||||||||| || || ||||| || ||| |||| | ||||| Sbjct 1285 ATTCAAAAGGAATCTACTCTTCACTTAGTATTGAGATTAAGAGGAGG 1239 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||| |||| || ||||| || | || ||||| || ||||| ||||| || |||||| | Sbjct 1693 ATGTAGATTTTCATTAAGACTTTGACTGGTAAGACCATTACTCTCGATGTTGAAGCCTCT 1634 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||| | | |||| || || ||||| |||| || ||||| || ||||| ||| || Sbjct 1633 GACTCTATTGAAAACGTCAAGGCTAAGATTTAAGATAAGGAAGGTATTCCTCCTGATTAA 1574 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | | || || || || ||| | || || ||| |||| | || || || || Sbjct 1573 TAAAGACTTATTTTCGCTGGTAAATAACTTGAAGATGGAAGAACTCTTTCCGACTACAAT 1514 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 |||||||||||||| || || ||||| || | ||||| | || || Sbjct 1513 ATTCAAAAGGAATCTACTCTTCACTTAGTTCTTAGATTGAGAGGTGG 1467 >seq24 Length=964434 Score = 91.5 bits (100), Expect = 1e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || || ||||||| || || |||||||| ||||| | || || ||||| || Sbjct 626516 ATGCAAATTTTCGTTAAAACCCTCACTGGTAAAACCATTACTTTGGACGTTGAAGCTTCC 626575 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | |||| || || |||||||||||||| ||||| || || |||||| || Sbjct 626576 GATACTATTGAAAACGTCAAGGCTAAGATCCAAGACAAGGAAGGTATCCCCCCCGATTAA 626635 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGA 24858 ||| | | ||||| || || || || || || || Sbjct 626636 CAAAGACTTATCTTCGCTGGTAAGCAACTTGAAGA 626670 >seq121 Length=281021 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 24713 TTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTA 24772 ||||||||||| | || |||||||| ||||| || ||| | | | || ||| || Sbjct 223895 TTTATTAAAACTTTGACAGGTAAAACCATTACCCTTGAAACTAATGGATCAGAAACAATA 223836 Query 24773 GAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTG 24832 |||| || || |||||| |||| |||||||| || ||||| || ||| | | | Sbjct 223835 GAAAATGTTAAGGCAAAGATTTAAGATAAAGAAGGTATTCCTCCAGACCAATAGAGACTT 223776 Query 24833 ATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAG 24892 || ||||| || || | || |||||| |||| || | || ||||| || |||| Sbjct 223775 ATTTTTGCTGGTAAGTAACTAGAGGATGGAAGAACTATCTATGACTATAATATCTAAAAA 223716 Query 24893 GAATCGACACTACACTTGGTGTT 24915 || || || || ||||| ||||| Sbjct 223715 GACTCTACCCTTCACTTAGTGTT 223693 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449895772291000