Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetrahymena_20borealis_20[genbank_20GCA_5F000260095.1_202012-05-01] 325 sequences; 93,506,076 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq77 136 6e-27 seq105 134 2e-26 seq21 131 3e-25 seq121 122 1e-22 seq81 87.8 3e-12 >seq77 Length=437778 Score = 136 bits (150), Expect = 6e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 || |||| ||| | || || || || || || || || ||| | ||||| ||| | Sbjct 1920 TGTAAATTTTCGTTAAGACTTTGACTGGTAAGACCATCACTCTCGATGTTGAAGCCTCTG 1861 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | ||||| ||||||| || ||| || || ||| ||||| ||||| || ||| || Sbjct 1860 ACTCTATTGAAAATGTCAAGGCTAAGATTTAAGATAAGGAAGGTATTCCTCCTGATTAAT 1801 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 ||||||| |||||||| ||||||||| | || ||| ||||| | | || || |||| Sbjct 1800 AAAGACTTATTTTTGCTGGTAAACAACTCGAAGATGGAAGAACTCTTTCCGACTACAATA 1741 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 | ||||||||||| ||| | || ||||||||| |||||||||| |||| Sbjct 1740 TTCAAAAAGAATCTACTCTTCACTTAGTATTAAGATTAAGAGGTGGTA 1693 Score = 134 bits (148), Expect = 2e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 || |||| || | |||||||| || || |||||||| ||| | ||||| ||| | Sbjct 1464 TGTAAATCTTTGTTAAAACATTGACTGGTAAAACAATCACTCTAGATGTTGAAGCCTCTG 1405 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | ||||| |||| || || ||| || || ||| ||||| ||||| || ||| || Sbjct 1404 ACTCTATTGAAAACGTCAAGGCTAAGATTTAAGATAAGGAAGGTATTCCTCCTGATTAAT 1345 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 ||||||||||||| || |||||| || | || ||| ||||| | | || || |||| Sbjct 1344 AAAGACTCATTTTCGCTGGTAAATAACTTGAAGATGGAAGAACTCTTTCTGACTACAATA 1285 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGT 146258 | ||||| ||||| ||| | || |||||||| |||||||||||||| Sbjct 1284 TTCAAAAGGAATCTACTCTTCACTTAGTATTGAGATTAAGAGGAGGT 1238 >seq105 Length=326417 Score = 134 bits (148), Expect = 2e-26 Identities = 149/199 (75%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 146044 TAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACGATACTATTCAAA 146103 ||||||| | |||||||| || || ||| |||| | | ||||||||| ||| Sbjct 8239 TAAAAACTCTTACAGGAAAGACTATCACTCTTGACATTAATTCCGCTGATACTATTGAAA 8180 Query 146104 ATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAACAAAGACTCATTT 146163 |||| |||| | |||| ||| ||| ||||| || || || ||| || ||||||| |||| Sbjct 8179 ATGTTAAAACTTAAATTCAAGATAAGGAAGGTATCCCTCCTGATTAATAAAGACTTATTT 8120 Query 146164 TTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATATACAAAAAGAAT 146223 ||||||| || ||| | || ||| ||||| | | ||||||||||| ||||||||| Sbjct 8119 TTGCAGGAAAGCAACTTGAAGATGGAAGAACTATCTCTGATTATAATATCTAAAAAGAAT 8060 Query 146224 CGACTATCCATTTAGTATT 146242 | ||| ||||||||||||| Sbjct 8059 CAACTCTCCATTTAGTATT 8041 Score = 123 bits (136), Expect = 4e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 || ||||||| | ||||||||||| ||||| || |||||| | ||||| | | | Sbjct 8479 TGTAAATATTTGTTAAAACATTAACTGGAAAGACTATTACTCTAGATGTCTAGTCTTCAG 8420 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | |||| ||||| | |||| ||| ||| || ||| ||||| || || || ||| || Sbjct 8419 ACTCTATAGAAAATATTAAAACTAAGATATAAGATAAGGAAGGTATCCCTCCTGATTAAT 8360 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 ||||||| |||||||| ||||| || | |||||| ||||| | | || ||||| | Sbjct 8359 AAAGACTTATTTTTGCTGGTAAGTAACTCGATGATGGAAGAACTATCTCTGACTATAACA 8300 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 | |||||||| || |||||||||| | |||| ||||| |||| Sbjct 8299 TTTCTAAAGAATCAACACTCCATTTAGTTCTTAGATTGAGAGGTGGTA 8252 >seq21 Length=988075 Score = 131 bits (144), Expect = 3e-25 Identities = 165/224 (74%), Gaps = 6/224 (3%) Strand=Plus/Minus Query 146037 ATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACGA-TAC 146095 ||||| | ||||| ||||| ||||||||||||||| | ||| | | ||| || || Sbjct 18988 ATATTTGTTAAAACCTTAACTGGAAAAACAATTACTTTAGAT---GCTCGTAAAGAGGAC 18932 Query 146096 TA--TTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAACAA 146153 || || || || | |||||||||| || ||||||||| || || || || ||| || Sbjct 18931 TATTTTTAAGATATTTAAAATAAAATTTAAGATAAAGAAGGAATACCTCCAGACCAATAA 18872 Query 146154 AGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATATA 146213 ||||| |||||||| ||| | || || |||||| | | | || | ||| ||| ||||| Sbjct 18871 AGACTTATTTTTGCTGGTTCATAACTATTTGATAACAAACCATTTAGAGAATATTATATA 18812 Query 146214 CAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGG 146257 | |||||| ||| | ||||||||| || |||| |||||||| Sbjct 18811 TAGCCAGAATCTACTTTGCATTTAGTACTAAGATTGAGAGGAGG 18768 >seq121 Length=281021 Score = 122 bits (134), Expect = 1e-22 Identities = 166/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAA-CATAAC 146090 || ||||||| | ||||||||||| || || || ||||| | ||||| | ||| | Sbjct 224865 TGTAAATATTTGTTAAAACATTAACTGGTAAGACTGTTACTCTAGATGTTTAGTCATCA- 224807 Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 || |||| ||||| | |||| ||| ||| || ||| ||||| || || || ||| | Sbjct 224806 GACTCTATAGAAAATATCAAAACTAAGATATAAGATAAGGAAGGTATCCCTCCTGATTAG 224747 Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210 |||||||||||||||| ||||| ||| | || ||| ||||| | | || |||||| Sbjct 224746 TAAAGACTCATTTTTGCTGGTAAGCAACTTGAAGATGGAAGAACTATCTCTGACTATAAT 224687 Query 146211 ATACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 || ||||||||| || | |||||||| | |||| ||||| |||| Sbjct 224686 ATCTCAAAAGAATCAACCCTTCATTTAGTTCTTAGATTGAGAGGTGGTA 224638 Score = 98.7 bits (108), Expect = 2e-15 Identities = 84/104 (81%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 146139 CCACCCGATCAACAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTA 146198 || || ||| || |||||||||||||||| ||||| || |||| ||| ||||| || Sbjct 224024 CCTCCTGATTAATAAAGACTCATTTTTGCTGGTAAGTAACTAGAAGATGGAAGAACTATA 223965 Query 146199 ACAGATTATAATATACAAAAAGAATCGACTATCCATTTAGTATT 146242 | ||||||||||| |||||||||| || |||||||||||||| Sbjct 223964 TCTGATTATAATATCTAAAAAGAATCTACCATCCATTTAGTATT 223921 >seq81 Length=427612 Score = 87.8 bits (96), Expect = 3e-12 Identities = 153/223 (69%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 146035 AAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACGATA 146094 || |||| ||||||||| | ||||||| || ||| | ||||| | || | ||| Sbjct 227980 AATTATTTATAAAAACACTTACAGGAAGTGTCATCACTTTGGATGTTGCTTCTACCAATA 227921 Query 146095 CTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAACAAA 146154 | || | || ||||| || || || |||| |||| |||||||| ||| || ||| Sbjct 227920 CAATCGAGGATCTAAAAGCAAAGATTTAAGATAAATAAGGAATTCCACCTGATTAATAAA 227861 Query 146155 GACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATATAC 146214 | || || | | |||| ||||| | || ||| |||||| | | |||||||| ||| Sbjct 227860 GGCTTATCTATATAGGTTAACAACTCGAAGATGGTAGAACTCTTAGTGATTATAACATAT 227801 Query 146215 AAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGG 146257 ||| |||| || | | | ||||| ||||||||||||| Sbjct 227800 AAATGGAATAAACAGTTTTTCTTGTATTGAGATTAAGAGGAGG 227758 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 786163206199000