Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetrahymena_20borealis_20[genbank_20GCA_5F000260095.1_202012-05-01] 325 sequences; 93,506,076 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq105 122 7e-23 seq121 116 3e-21 seq77 114 1e-20 >seq105 Length=326417 Score = 122 bits (134), Expect = 7e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || ||||| | || || ||||| || || |||||||| ||||||||| || | Sbjct 8254 CCACCTCTCAATCTAAGAACTAAATGGAGTGTTGATTCTTTAGAAATGTTATAGTCAGAG 8313 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 || || | ||||||||||| || |||||| | || | ||||| | ||| || || Sbjct 8314 ATAGTTCTTCCATCATCGAGTTACTTACCAGCAAAAATAAGTCTTTATTAATCAGGAGGG 8373 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 ||||| || || |||| || || ||| | | |||||| || ||| ||| | || Sbjct 8374 ATACCTTCCTTATCTTATATCTTAGTTTTAATATTTTCTATAGAGTCTGAAGACTAGACA 8433 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || ||||| ||||| || |||||||| |||||||||||||| | ||| Sbjct 8434 TCTAGAGTAATAGTCTTTCCAGTTAATGTTTTAACAAATATTTACAT 8480 >seq121 Length=281021 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || ||||| | || || |||||||| || ||||||||| || ||||| || | Sbjct 224640 CCACCTCTCAATCTAAGAACTAAATGAAGGGTTGATTCTTTTGAGATATTATAGTCAGAG 224699 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 || || | ||| || ||||| || |||||| | || | ||||| || ||| || || Sbjct 224700 ATAGTTCTTCCATCTTCAAGTTGCTTACCAGCAAAAATGAGTCTTTACTAATCAGGAGGG 224759 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 ||||| || || |||| || || ||||| | |||||| || ||| || | || Sbjct 224760 ATACCTTCCTTATCTTATATCTTAGTTTTGATATTTTCTATAGAGTCTGATGACTAAACA 224819 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || ||||| | ||| || |||||||| |||||||||||||| | ||| Sbjct 224820 TCTAGAGTAACAGTCTTACCAGTTAATGTTTTAACAAATATTTACAT 224866 >seq77 Length=437778 Score = 114 bits (126), Expect = 1e-20 Identities = 153/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 29578 ACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCG 29637 || || ||||| || |||||||||||||| || || || | || || | ||| ||| Sbjct 1713 ACTAAGTGAAGAGTAGATTCTTTTTGAATATTGTAGTCGGAAAGAGTTCTTCCATCTTCG 1772 Query 29638 AGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGT 29697 |||||||| |||||| | || | ||||| | ||| || |||||||| || || |||| Sbjct 1773 AGTTGTTTACCAGCAAAAATAAGTCTTTATTAATCAGGAGGAATACCTTCCTTATCTT-A 1831 Query 29698 AATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTT 29756 ||| || | |||||| |||| | || |||||| ||| || || ||||| || || || Sbjct 1832 AATCTTAGCCTTGACATTTTCAATAGAGTCAGAGGCTTCAACATCGAGAGTGATGGTCTT 1891 Query 29757 GCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||||| || || ||||| || || | ||| Sbjct 1892 ACCAGTCAAAGTCTTAACGAAAATTTACAT 1921 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||| || || | || || || ||||| || ||||| |||||||| || || || | | Sbjct 1239 CCTCCTCTTAATCTCAATACTAAGTGAAGAGTAGATTCCTTTTGAATATTGTAGTCAGAA 1298 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || | ||| || |||| ||| ||||| | || | ||||| | ||| || ||| Sbjct 1299 AGAGTTCTTCCATCTTCAAGTTATTTACCAGCGAAAATGAGTCTTTATTAATCAGGAGGA 1358 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 ||||| || || |||| ||| || | ||||| |||| | || |||||| ||| || Sbjct 1359 ATACCTTCCTTATCTTA-AATCTTAGCCTTGACGTTTTCAATAGAGTCAGAGGCTTCAAC 1417 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || ||||| || ||||| ||||| || ||||||||||| || | ||| Sbjct 1418 ATCTAGAGTGATTGTTTTACCAGTCAATGTTTTAACAAAGATTTACAT 1465 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385217674170825