Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetrahymena_20borealis_20[genbank_20GCA_5F000260095.1_202012-05-01] 325 sequences; 93,506,076 total letters Query= NC_023611.1 Length=198533 Score E Sequences producing significant alignments: (Bits) Value seq9 120 4e-22 seq121 86.0 8e-12 >seq9 Length=1304334 Score = 120 bits (132), Expect = 4e-22 Identities = 353/534 (66%), Gaps = 15/534 (3%) Strand=Plus/Minus Query 168575 TGATATAGGTGTTAAAGTTTGGAACGATAATGGTTCTCGTGAATTTTTAGATTTATGTGG 168634 ||| | |||||||||| ||||| | | || ||| |||||||||||||||| || Sbjct 106410 TGAAAAAGGTGTTAAAATTTGGGAAGGAAACGGTAGCCGTGAATTTTTAGATTCTCTAGG 106351 Query 168635 TTTTACCGAAAGAAAAGAAGGTGATTTAGGTCCAATTTATGGATTTCAATGGAGACATGC 168694 ||||| | ||| ||||||| |||||||||||| ||||||| || ||||||||||| Sbjct 106350 TTTTAAGAATAGATAAGAAGGCGATTTAGGTCCAGTTTATGGCTTCTAATGGAGACATTT 106291 Query 168695 AGGAGCTCAATATATTGACTGTG-ATACAGATTACACCGGACAAGGAGTAGACCAATTAA 168753 || || |||||| || | || |||| |||| ||| ||||||||||| | || Sbjct 106290 TGGTGCAGAATATAAAGA-TATGCATACTAATTATTAAGGATAAGGAGTAGACTAGCTAT 106232 Query 168754 GTCAAACTATAAATACTTTACACAACAATCCGGAAAATAGAAGAATATTAATTAATAGTT 168813 | || || || || | || ||||| || | ||||||||| | || | | | Sbjct 106231 AGGATTTAATTAACACCATAAAGAAAAATCCAGATAGTAGAAGAATGATTATGAGTGCAT 106172 Query 168814 GGGATGTACCACAACTTGATAAAATGGTTCTTCCCCCTTGTCAC-ACTTTAGTGCAATTT 168872 || |||| | | ||| |||| || || || || ||| | ||| ||||| Sbjct 106171 GGAATGTGAAAGATCTTCCATTGATGGCACTACCTCCCTGCCACGTAATGAGT-TAATTT 106113 Query 168873 TATGT-AAGGA--AAAAATCAATCTTAGATTGTCAGTTGTATCAAAGATCAGCTGATTTA 168929 ||||| || || |||| || | || | ||||| |||||||| |||| | Sbjct 106112 TATGTAAATGATGGTAAATTAAGC------TGCATGATGTATTAAAGATCATGTGATATG 106059 Query 168930 GGATTAGGAGTACCTTATAATATTGGATTTTATTCATTTTTAACACTTGTGCTAAGTAAA 168989 ||||||||| | || | |||||||| |||| | || |||| | | || | | | | Sbjct 106058 GGATTAGGAATTCCATTTAATATTGCTAGTTATGCTTTGCTAACTCATATGAT-TGCACA 106000 Query 168990 TGGTGTA-ATTTGACGCCTGGAAAGTTTATTCATACTTTTGGAGATGTTCACGTGTATTC 169048 | | | |||| ||| | || | ||| ||| || |||| ||| || || || Sbjct 105999 TATAACATAATTGAAAGTAGGAGAATTCGTCCATGTTTTAGGTGATGCTCATGTTTACTC 105940 Query 169049 AAACCATGTTGAACCTTTAAAGGTTCAATTGAAAAGAAAACCATATTCTTTTCC 169102 ||||||||||||| ||||| || || | |||||| || ||| | || || Sbjct 105939 AAACCATGTTGAATAATTAAAAATTTAACTAGAAAGAACTCCTTATCCCTTCCC 105886 >seq121 Length=281021 Score = 86.0 bits (94), Expect = 8e-12 Identities = 53/57 (93%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 51988 CATATAATGCTGATTTTGATGGGGATGAAATGAATTTACATGTTCCTCAATCATATG 52044 |||||||||||||||||||||| |||||||||||| | |||||||||||||| |||| Sbjct 116175 CATATAATGCTGATTTTGATGGTGATGAAATGAATATGCATGTTCCTCAATCTTATG 116119 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635175019591000