Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetrahymena_20borealis_20[genbank_20GCA_5F000260095.1_202012-05-01] 325 sequences; 93,506,076 total letters Query= NC_023613.1 Length=204815 Score E Sequences producing significant alignments: (Bits) Value seq9 104 3e-17 >seq9 Length=1304334 Score = 104 bits (114), Expect = 3e-17 Identities = 372/575 (65%), Gaps = 15/575 (3%) Strand=Plus/Minus Query 180425 AAAGAATTATTATGGATAATGAAAGGTTTAACAAATTCTAATTTGTTAAATGATATTGGT 180484 || ||||| ||||| | || ||||| || || |||| | | | ||| | ||| Sbjct 106460 AAGGAATTGATATGGTTTATCAAAGGAAGTACTAACAGTAATATTCTTACTGAAAAAGGT 106401 Query 180485 GTTAAAGTGTGGAATGATAATGGTTCGCGTAAGTTTTTAGATTCTTGTGGATTTCATTTT 180544 |||||| | ||| | | || ||| ||| | |||||||||||| || ||| | | Sbjct 106400 GTTAAAATTTGGGAAGGAAACGGTAGCCGTGAATTTTTAGATTCTCTAGGTTTTAAGAAT 106341 Query 180545 CGAAAAGAAGGTGATTTAGGACCAATTTATGGATTTCAATGGAGACATGCAGGAGCTCAA 180604 || ||||||| |||||||| ||| ||||||| || ||||||||||| || || || Sbjct 106340 AGATAAGAAGGCGATTTAGGTCCAGTTTATGGCTTCTAATGGAGACATTTTGGTGCAGAA 106281 Query 180605 TATATTGACTGTG-ATACCAACTATATCGGGCAAGGTATAGACCAATTAAGCCAAGTTAT 180663 |||| || | || |||| || ||| || |||| ||||| | || | | || Sbjct 106280 TATAAAGA-TATGCATACTAATTATTAAGGATAAGGAGTAGACTAGCTATAGGATTTAAT 106222 Query 180664 AGAAACTATAAAAAATAATCCCGAATGCCGAAGAATAATCATAGATAGTTGGAATGTATC 180723 | || ||||| || ||||| || | ||||||| || || | |||||||| Sbjct 106221 TAACACCATAAAGAAAAATCCAGATAGTAGAAGAATGATTATGAGTGCATGGAATGTGAA 106162 Query 180724 ACAATTACCAGATATGGCTCTTCCACCATGTCACTGTTTGGTACAATTTTATGTTAGAAA 180783 | | | ||| ||||| || || || || ||| || |||||||||| ||| Sbjct 106161 AGATCTTCCATTGATGGCACTACCTCCCTGCCACGTAATGAGTTAATTTTATGT---AAA 106105 Query 180784 TAAAATTTATTTAGATTGCCAATTGTATCAAAGATCTGCAGATTTAGGATTAGGTGTACC 180843 | | | | ||| ||| ||||| ||||||| ||| | |||||||| | || Sbjct 106104 TGATGGTAAATTAAGCTGCATGATGTATTAAAGATCATGTGATATGGGATTAGGAATTCC 106045 Query 180844 ATATAATATTGCTTTCTATTCATTTTTGGT-----ATGTGTTCTCTCAAAGTGGTGCAAT 180898 || |||||||||| ||| | |||| | || || | | || | | ||| Sbjct 106044 ATTTAATATTGCTAGTTATGC---TTTGCTAACTCATATGATTGCACATA-TAACATAAT 105989 Query 180899 TTAACCCCTGGAAAATTTATTCACACTTTTGGGGATGTTCATGTATATTCTAACCATATT 180958 | || ||| |||| | || ||| || |||| |||||| || || |||||| || Sbjct 105988 TGAA-AGTAGGAGAATTCGTCCATGTTTTAGGTGATGCTCATGTTTACTCAAACCATGTT 105930 Query 180959 GACCAATTAAAAATTCAATTAAGCAGAAACCCTTA 180993 || ||||||||||| || || |||| ||||| Sbjct 105929 GAATAATTAAAAATTTAACTAGAAAGAACTCCTTA 105895 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 655277337925000