Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetrahymena_20borealis_20[genbank_20GCA_5F000260095.1_202012-05-01] 325 sequences; 93,506,076 total letters Query= NC_023615.1 Length=196456 Score E Sequences producing significant alignments: (Bits) Value seq9 107 2e-18 seq121 86.0 8e-12 >seq9 Length=1304334 Score = 107 bits (118), Expect = 2e-18 Identities = 343/529 (65%), Gaps = 5/529 (1%) Strand=Plus/Minus Query 171660 TGATATAGGTGTTAAAGTTTGGAATGATAATGGTTCTCGTGAATTTTTAGATTTATGCGG 171719 ||| | |||||||||| ||||| | | || ||| |||||||||||||||| || Sbjct 106410 TGAAAAAGGTGTTAAAATTTGGGAAGGAAACGGTAGCCGTGAATTTTTAGATTCTCTAGG 106351 Query 171720 GTTTACTGAAAGAAAAGAAGGTGATTTAGGTCCAATTTATGGATTTCAATGGAGACATGC 171779 |||| | ||| ||||||| |||||||||||| ||||||| || ||||||||||| Sbjct 106350 TTTTAAGAATAGATAAGAAGGCGATTTAGGTCCAGTTTATGGCTTCTAATGGAGACATTT 106291 Query 171780 AGGGGCTCAATATATCGACTGTTATACAGATTACACAGGACAAGGAGTGGACCAATTAAG 171839 || || |||||| || |||| |||| |||| ||||||| ||| | || Sbjct 106290 TGGTGCAGAATATAAAGATATGCATACTAATTATTAAGGATAAGGAGTAGACTAGCTATA 106231 Query 171840 TCAAACTATTAATACTTTACAAAACAACCCAGAAAGTAGAAGGATGTTAATTGATAGTTG 171899 | ||||| || || | || || ||||| |||||||| ||| | || | || Sbjct 106230 GGATTTAATTAACACCATAAAGAAAAATCCAGATAGTAGAAGAATGATTATGAGTGCATG 106171 Query 171900 GAATGTACCTCAACTTGATAAAATGGTTCTTCCTCCTTGCCACACTTTAGCACAATTTTA 171959 |||||| | ||| |||| || ||||| |||||| | ||||||| Sbjct 106170 GAATGTGAAAGATCTTCCATTGATGGCACTACCTCCCTGCCACGTAATGAGTTAATTTTA 106111 Query 171960 TGTCAGaaaaaaaTCAATCTTAGATTGTCAGTTATATCAAAGATCAGCTGATTTAGGATT 172019 ||| ||| | | ||| || | | ||| |||||||| |||| | ||||| Sbjct 106110 TGT---AAATGATGGTAAATTAAGCTGCATGATGTATTAAAGATCATGTGATATGGGATT 106054 Query 172020 GGGGGTACCTTATAATATTGGATTTTATTCATTTTTAATACTTGTGTTAAGTAAATGGTG 172079 || | || | |||||||| |||| | || ||| | | || | | | || Sbjct 106053 AGGAATTCCATTTAATATTGCTAGTTATGCTTTGCTAACTCATATGAT-TGCACATATAA 105995 Query 172080 CA-ATTTAACTCCAGGAAAGTTTATTCATACTTTTGGAGATGTTCACGTGTATTCAAATC 172138 || | || | |||| | || | ||| ||| || |||| ||| || || ||||| | Sbjct 105994 CATAATTGAAAGTAGGAGAATTCGTCCATGTTTTAGGTGATGCTCATGTTTACTCAAACC 105935 Query 172139 ATGTTGAACCTTTAAAGGTTCAATTAAAAAGAAAACCATATACTTTTCC 172187 |||||||| ||||| || || || |||||| || ||| | || || Sbjct 105934 ATGTTGAATAATTAAAAATTTAACTAGAAAGAACTCCTTATCCCTTCCC 105886 >seq121 Length=281021 Score = 86.0 bits (94), Expect = 8e-12 Identities = 53/57 (93%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 50438 CATATAATGCTGATTTTGATGGGGATGAAATGAATTTACATGTTCCTCAATCATATG 50494 |||||||||||||||||||||| |||||||||||| | |||||||||||||| |||| Sbjct 116175 CATATAATGCTGATTTTGATGGTGATGAAATGAATATGCATGTTCCTCAATCTTATG 116119 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628528646592000