Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetrahymena_20borealis_20[genbank_20GCA_5F000260095.1_202012-05-01] 325 sequences; 93,506,076 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq77 188 1e-42 seq81 170 4e-37 seq105 165 2e-35 seq121 140 6e-28 seq135 116 7e-21 seq21 102 2e-16 >seq77 Length=437778 Score = 188 bits (208), Expect = 1e-42 Identities = 191/248 (77%), Gaps = 3/248 (1%) Strand=Plus/Plus Query 82579 ACCTACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAAT 82638 || |||| ||||| || | | |||||||| |||||||||||||| || ||||| || | Sbjct 1690 ACATACCACCTCTTAATCTTAATACTAAGTGAAGAGTAGATTCTTTTTGAATATTGTAGT 1749 Query 82639 CAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTG 82698 | || ||| |||| || ||||| |||||||| |||||||| || ||||||| || ||| | Sbjct 1750 CGGAAAGAGTTCTTCCATCTTCGAGTTGTTTACCAGCAAAAATAAGTCTTTATTAATCAG 1809 Query 82699 GAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTT 82758 |||| || ||||||||||||| |||||| || || ||||||||||| | ||| | || Sbjct 1810 GAGGAATACCTTCCTTATCTTAAATCTTAGCCTTGACATTTTCAATAGAGTCAGAGGCTT 1869 Query 82759 CTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT---TATTA 82815 | || || | ||| || ||||| || ||||| ||||| || || || | ||| ||||| Sbjct 1870 CAACATCGAGAGTGATGGTCTTACCAGTCAAAGTCTTAACGAAAATTTACATGTGTATTA 1929 Query 82816 TATTTTTC 82823 | ||||| Sbjct 1930 TTATTTTC 1937 Score = 179 bits (198), Expect = 7e-40 Identities = 179/232 (77%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 82579 ACCTACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAAT 82638 || |||| |||||||| | ||||||||||| ||||||||||| || || ||||| || | Sbjct 1462 ACATACCACCTCTCAATCTAAGAACTAAGTGAAGAGTAGATTCCTTTTGAATATTGTAGT 1521 Query 82639 CAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTG 82698 | || ||| |||| || ||||| |||| ||| ||||| || || ||||||| || ||| | Sbjct 1522 CGGAAAGAGTTCTTCCATCTTCAAGTTATTTACCAGCGAAAATAAGTCTTTATTAATCAG 1581 Query 82699 GAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTT 82758 |||| || ||||||||||||| |||||| || || || |||||||| | ||| | || Sbjct 1582 GAGGAATACCTTCCTTATCTTAAATCTTAGCCTTGACGTTTTCAATAGAGTCAGAGGCTT 1641 Query 82759 CTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | || || | ||| || ||||| || ||||| ||||| | || |||| ||| Sbjct 1642 CAACATCGAGAGTAATGGTCTTACCAGTCAAAGTCTTAATGAAAATCTACAT 1693 Score = 172 bits (190), Expect = 1e-37 Identities = 175/228 (77%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642 ||||||||| || | || |||||||| ||||||||||| || || ||||| || ||||| Sbjct 1238 ACCTCCTCTTAATCTCAATACTAAGTGAAGAGTAGATTCCTTTTGAATATTGTAGTCAGA 1297 Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702 ||| |||| || ||||| |||| ||| ||||| || || ||||||| || ||| ||||| Sbjct 1298 AAGAGTTCTTCCATCTTCAAGTTATTTACCAGCGAAAATGAGTCTTTATTAATCAGGAGG 1357 Query 82703 TATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762 || ||||||||||||| |||||| || || || |||||||| | ||| | ||| || Sbjct 1358 AATACCTTCCTTATCTTAAATCTTAGCCTTGACGTTTTCAATAGAGTCAGAGGCTTCAAC 1417 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | ||| || || || || ||||| || || ||||| || | ||| Sbjct 1418 ATCTAGAGTGATTGTTTTACCAGTCAATGTTTTAACAAAGATTTACAT 1465 >seq81 Length=427612 Score = 170 bits (188), Expect = 4e-37 Identities = 175/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642 ||| ||||| || | || |||||||| || |||||||| || || || || ||||| || Sbjct 245182 ACCACCTCTTAATCTCAAGACTAAGTGAAGGGTAGATTCCTTTTGGATGTTGTAATCGGA 245241 Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702 || |||| |||||||| ||||| || ||||| ||||| ||||||| || ||| || || Sbjct 245242 AAGGGTTCTGCCGTCTTCAAGTTGCTTACCAGCGAAGATAAGTCTTTATTAATCGGGGGG 245301 Query 82703 TATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762 || |||||||||||||| ||||| || || ||||||||||| || ||| | ||| || Sbjct 245302 GATACCTTCCTTATCTTGGATCTTGGCCTTGACATTTTCAATAGTGTCAGAGGCTTCAAC 245361 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 || || || || ||||| || || || ||||| || || || | |||| Sbjct 245362 GTCTAAGGTAATGGTCTTACCAGTTAAAGTCTTAACGAAAATTTACATT 245410 Score = 102 bits (112), Expect = 2e-16 Identities = 128/176 (73%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 82628 TATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCT 82687 ||| ||||||||| ||| ||||||| ||||| ||||||| || | |||| || || Sbjct 227802 TATGTTATAATCACTAAGAGTTCTACCATCTTCGAGTTGTTAACCTATATAGATAAGCCT 227861 Query 82688 TTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGT 82747 || || ||| || || ||||||| ||||||| |||||||||||||| || || || || Sbjct 227862 TTATTAATCAGGTGGAATTCCTTATTTATCTTAAATCTTTGCTTTTAGATCCTCGATTGT 227921 Query 82748 ATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATA 82803 || ||| | || |||||||| || | ||||| | || |||| ||||| Sbjct 227922 ATTGGTAGAAGCAACATCCAAAGTGATGACACTTCCTGTAAGTGTTTTTATAAATA 227977 >seq105 Length=326417 Score = 165 bits (182), Expect = 2e-35 Identities = 162/209 (78%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 82602 ACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCT 82661 |||||||| || ||||||||||| | |||||||| ||||| | | |||| || ||||| Sbjct 7585 ACTAAGTGAAGGGTAGATTCTTTTTAGATATTATAGTCAGAGATAGTTCTTCCATCTTCA 7644 Query 82662 AGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGA 82721 ||||| ||||| ||||| || ||||||| || ||| ||||| || ||||||||||||||| Sbjct 7645 AGTTGCTTTCCTGCAAATATAAGTCTTTATTAATCAGGAGGGATACCTTCCTTATCTTGA 7704 Query 82722 ATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTG 82781 || | | ||| ||||||||||| |||||| | | | || | ||| || ||||| Sbjct 7705 ATTTAAGTTTTAACATTTTCAATGGTATCAGCGGAATTAATATCAAGAGTGATAGTCTTT 7764 Query 82782 CCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| | || |||||||| |||| ||| Sbjct 7765 CCTGTAAGAGTTTTTACAAAAATCTACAT 7793 Score = 161 bits (178), Expect = 2e-34 Identities = 161/209 (77%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 82602 ACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCT 82661 ||||| || ||||| |||||||| | |||||||||||||| | | |||| || ||||| Sbjct 8044 ACTAAATGGAGAGTTGATTCTTTTTAGATATTATAATCAGAGATAGTTCTTCCATCTTCA 8103 Query 82662 AGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGA 82721 ||||| ||||| ||||| || ||||||| || ||| ||||| || ||||||||||||||| Sbjct 8104 AGTTGCTTTCCTGCAAAAATAAGTCTTTATTAATCAGGAGGGATACCTTCCTTATCTTGA 8163 Query 82722 ATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTG 82781 || | | ||| ||||||||||| |||||| | | | || | ||| || ||||| Sbjct 8164 ATTTAAGTTTTAACATTTTCAATAGTATCAGCGGAATTAATGTCAAGAGTGATAGTCTTT 8223 Query 82782 CCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| | || |||||||| | || ||| Sbjct 8224 CCTGTAAGAGTTTTTACAAAAACCTACAT 8252 Score = 140 bits (154), Expect = 6e-28 Identities = 170/232 (73%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 82579 ACCTACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAAT 82638 || |||| |||||||| | |||||||| || || || |||||||| || ||||| | Sbjct 8249 ACATACCACCTCTCAATCTAAGAACTAAATGGAGTGTTGATTCTTTAGAAATGTTATAGT 8308 Query 82639 CAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTG 82698 |||| | | |||| || || || |||| || |||||||| || ||||||| || ||| | Sbjct 8309 CAGAGATAGTTCTTCCATCATCGAGTTACTTACCAGCAAAAATAAGTCTTTATTAATCAG 8368 Query 82699 GAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTT 82758 |||| || ||||||||||||| ||||| | ||| | |||||| || | || || | Sbjct 8369 GAGGGATACCTTCCTTATCTTATATCTTAGTTTTAATATTTTCTATAGAGTCTGAAGACT 8428 Query 82759 CTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || || | ||| || ||||| || || || || || |||||||| | ||| Sbjct 8429 AGACATCTAGAGTAATAGTCTTTCCAGTTAATGTTTTAACAAATATTTACAT 8480 >seq121 Length=281021 Score = 140 bits (154), Expect = 6e-28 Identities = 170/232 (73%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 82579 ACCTACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAAT 82638 || |||| |||||||| | |||||||| || || || |||||||| |||||||| | Sbjct 224635 ACATACCACCTCTCAATCTAAGAACTAAATGAAGGGTTGATTCTTTTGAGATATTATAGT 224694 Query 82639 CAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTG 82698 |||| | | |||| || ||||| ||||| || |||||||| || ||||||| | ||| | Sbjct 224695 CAGAGATAGTTCTTCCATCTTCAAGTTGCTTACCAGCAAAAATGAGTCTTTACTAATCAG 224754 Query 82699 GAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTT 82758 |||| || ||||||||||||| ||||| | ||| | |||||| || | || | | Sbjct 224755 GAGGGATACCTTCCTTATCTTATATCTTAGTTTTGATATTTTCTATAGAGTCTGATGACT 224814 Query 82759 CTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || || | ||| | ||||| || || || || || |||||||| | ||| Sbjct 224815 AAACATCTAGAGTAACAGTCTTACCAGTTAATGTTTTAACAAATATTTACAT 224866 Score = 98.7 bits (108), Expect = 2e-15 Identities = 93/119 (78%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || ||||| | | || ||||| || | ||||||||||| | ||||||||||||||| Sbjct 223906 CCACCTCTAAGCCTCAATACTAAATGGATGGTAGATTCTTTTTAGATATTATAATCAGAT 223965 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702 | | |||| || |||||||||| || |||||||| || ||||||| || ||| ||||| Sbjct 223966 ATAGTTCTTCCATCTTCTAGTTACTTACCAGCAAAAATGAGTCTTTATTAATCAGGAGG 224024 >seq135 Length=235529 Score = 116 bits (128), Expect = 7e-21 Identities = 115/149 (77%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 82572 ATTTATCACCTACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATA 82631 |||||| | ||| ||||| || | | ||||||||| ||||| ||||| || | ||| Sbjct 235379 ATTTATATTCAACCACCTCTTAATCTTAAAACTAAGTGGAGAGTTGATTCCTTTTAAATA 235438 Query 82632 TTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGT 82691 || || ||||| || |||| || ||||| |||| || ||||||||||| ||||||| | Sbjct 235439 TTGTAGTCAGAAAGGGTTCTTCCATCTTCAAGTTACTTACCAGCAAAGATAAGTCTTTAT 235498 Query 82692 TGATCTGGAGGTATTCCTTCCTTATCTTG 82720 ||||| || || || |||||||| ||||| Sbjct 235499 TGATCGGGGGGAATACCTTCCTTGTCTTG 235527 >seq21 Length=988075 Score = 102 bits (112), Expect = 2e-16 Identities = 171/242 (71%), Gaps = 13/242 (5%) Strand=Plus/Plus Query 82576 ATCACCTACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTAT 82635 ||| ||| ||||||||||| | || ||||| |||| |||||||||| || ||||| || Sbjct 18761 ATCTCCT-CCTCCTCTCAATCTTAGTACTAAATGCAAAGTAGATTCTGGCTATATATAAT 18819 Query 82636 AATC---AGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTT 82692 | || | || | | || || ||||| | |||||||| || ||||||| || Sbjct 18820 ATTCTCTAAATGGTTTGTTA---TCAAATAGTTATGAACCAGCAAAAATAAGTCTTTATT 18876 Query 82693 GATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTT--CAATCGT-AT 82749 | ||||||||||||||||| ||||||| ||| || || | || || ||| || | Sbjct 18877 GGTCTGGAGGTATTCCTTCTTTATCTTAAATTTTATTTTAAATATCTTAAAAATAGTCCT 18936 Query 82750 CATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCA 82809 | ||| | | || ||||| || || || || || || || || |||||||||| || Sbjct 18937 CTTTACG---AGCATCTAAAGTAATTGTTTTTCCAGTTAAGGTTTTAACAAATATCTACA 18993 Query 82810 TT 82811 || Sbjct 18994 TT 18995 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981823111610175