Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetrahymena_20borealis_20[genbank_20GCA_5F000260095.1_202012-05-01] 325 sequences; 93,506,076 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq2 208 2e-48 seq122 143 6e-29 seq28 141 2e-28 >seq2 Length=2195051 Score = 208 bits (230), Expect = 2e-48 Identities = 472/701 (67%), Gaps = 9/701 (1%) Strand=Plus/Plus Query 110307 TTTGGTTTCAAAACTCTTGAACGTGCTTATTTACTTCGTGTCAATGGCGAGATCATTGAA 110366 ||||||||||| ||||| |||||| |||| | | | ||||| | || |||| Sbjct 428182 TTTGGTTTCAAGACTCTCGAACGTAGTTATCTTTTAAAATTGAATGGTAAAATTGCTGAA 428241 Query 110367 CGTCCTCAACACATGTTTCTTCGTGTTGCGATTGGTATTCATG-GACATGATATTAAAGC 110425 | |||||| | ||||| | | ||| | |||||||||||| || | ||| | || Sbjct 428242 AGACCTCAATAAATGTTAATGAGAGTTTCTATTGGTATTCATAAGAGA-GATTTGGAAAG 428300 Query 110426 TGTTATTGAATGTTATGATGTATTAAGTAAAAAGAAAGCTATTCATGCTACTCCTACCCT 110485 || | |||| || || | ||| ||||| | ||||||||||||||| || Sbjct 428301 TGCCTTCCGTACTTATAATTTAATGAGTGAAAAGTGGTTCACTCATGCTACTCCTACTCT 428360 Query 110486 ATTTAACGCAGGAACTAATGGAGGAC-AATTGGCTTCTTGCTTTCTT-CTAGGAATTAAC 110543 || || |||| ||| || | || || | ||| |||||| || ||| | Sbjct 428361 TTTCAATTCAGGTACTCCCA-AGCCCTAAATGAGTAGTTG-TTTCTTACTTCAAATGTAA 428418 Query 110544 GATGATTCTATTGAAGGTATTTATGATGCTCTTAAAGAAACTGCTCTTATTTCTAAAAAC 110603 | ||||| || || ||||||||||| ||||||| || |||| | || ||||| | Sbjct 428419 GCAGATTCCATAGACGGTATTTATGACACTCTTAAGCAATGTGCTTTAATCTCTAAGAGT 428478 Query 110604 TCTGGAGGAATTGGTATTCACGTTCATGATATTCGCTCAAAAGGAGCAAATATCGCAACA 110663 | || || |||||| || ||||||| |||| | | | || |||| | Sbjct 428479 GCAGGTGGTATTGGTCTTTCCGTTCATAATATCAGAGCTAGAGATAGTTATATTAGAGGT 428538 Query 110664 GCGAAGGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTGCAAAA 110723 | || ||| ||| | |||||||||||| ||| | | |||||||| || ||||| | | Sbjct 428539 ACAAATGGTATTTCTAATGGACTTGTTCCTATGCTCCGTGTCTTCAATGATACTGCTAGA 428598 Query 110724 TATGTGAATCAAGGTGGT---AAGAGAAATGGCTCATTTGCTATCTATCTCGAACCTTGG 110780 ||||| ||||||||||| |||||||| || || ||||| | || | ||||||||| Sbjct 428599 TATGTTGATCAAGGTGGTGGCAAGAGAAAGGGTTCCTTTGCCGTTTACTTAGAACCTTGG 428658 Query 110781 CATTCAGATATATTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTGAAGAACAAAGA 110840 ||||| ||| | || || ||| | | | || ||||| || |||||| ||||| Sbjct 428659 CATTCTGATGTTTTCGACTTCCTTTAGTTGAAGAAGAATCACGGTAAGGAAGAATAAAGA 428718 Query 110841 GCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTTCAAGAA 110900 || | |||||||| | |||| | |||||| | ||| | |||||||| | || | Sbjct 428719 GCTAGAGATTTATTCTTTGCACTTTGGATTCCCGATCTTTTCATGAAGAGAGTCATTGCT 428778 Query 110901 AATGGCATGTGGTCTCTTATGTGTCCTCATCGTTCTCCTGGTCTATCTGATGTATATGGA 110960 |||| | ||| |||||||||||||| || | ||||| || ||||||| | || Sbjct 428779 GATGGAAAATGGACTCTTATGTGTCCTAATGAATGCCCTGGACTTCCTGATGTTTGGGGT 428838 Query 110961 AAAGAGTTTGAAGACCTTTACGAAAAATATGAAAAAGAAGG 111001 | || ||||||| ||||| ||||||||||| ||||| Sbjct 428839 GATGAATTTGAAGCTCTTTATACTAAATATGAAAATGAAGG 428879 Score = 100 bits (110), Expect = 7e-16 Identities = 143/196 (73%), Gaps = 8/196 (4%) Strand=Plus/Plus Query 112636 TTCAAAAAGCAAAACATTCTAATAACAAGCATAGACCAATTGGCATTGGCGTACAAGGAT 112695 ||| | |||| ||| | || |||| | |||||||| ||||| ||||| || |||| Sbjct 429350 TTCCAGAAGCTAAAAAGTCAAATATTAGACATAGACCTATTGGTATTGGTGTTTAAGGTC 429409 Query 112696 TAGCTGATGTATTTATGATGATGCGAATTCCTTTTGATTCTGACCGTGCTAA-ATTCTTA 112754 | ||||||| ||||| | |||| ||||| |||| || |||| ||| | ||| ||| Sbjct 429410 TTGCTGATGCCTTTATTAAGATGAGAATTTCTTTCGAAAGTGACGAAGCTTAGATTATTA 429469 Query 112755 AATGAAAAGATTTTCGAAACAATCTATTTCGCTGCTATGACTGAA---TCTAATGAACTT 112811 | ||||| || ||||||||||||||||| | |||| || |||| |||| ||| || Sbjct 429470 A-TGAAAGAATCTTCGAAACAATCTATTTTGGTGCT-TG--TGAAGCTTCTATGGAAATT 429525 Query 112812 GCTATTAAAAAAGCAG 112827 ||||| || ||| || Sbjct 429526 GCTATAAAGGAAGGAG 429541 >seq122 Length=280157 Score = 143 bits (158), Expect = 6e-29 Identities = 192/262 (73%), Gaps = 10/262 (4%) Strand=Plus/Minus Query 278651 AGATGGGAAATTGCTCTATCACCTTCT--GAGG---AATTTAAACAAGTATCTTTTGTTA 278705 |||||||||||| || |||||| |||| || | |||||||| |||| |||||||||| Sbjct 102232 AGATGGGAAATT-CT-TATCACTTTCTCTGATGGTTAATTTAAATAAGTCTCTTTTGTTA 102175 Query 278706 ATGGTATTAATACTTCAAAAGGTGGAAAACATGTTGATTATGTTCTTAATAAGATTGTGA 278765 |||||||| ||||| | |||||| |||||||| ||||||||| || | |||||||| Sbjct 102174 ATGGTATTTGCACTTCTAGAGGTGGTAAACATGTAGATTATGTTGTTGACAAGATTGTAG 102115 Query 278766 AGAAGATTTCAGAGATAATTGAGAAGAAGGAAAAG---ATTAAGGTAAAATCAAATAATA 278822 | | || | ||| ||| ||||| | ||| || | | ||| || || | | Sbjct 102114 AAAGAATCTAAGAACAAATCACAAAGAAAAATAAGGATCTTGATATTAAACCACATTAAA 102055 Query 278823 TTAAAGAACACTTGTTTATATTTGTAAATTGTTTGATTATAAATCCTTCATTTGATTCGC 278882 ||| | || | | ||||| || |||||||| | ||| | |||||||| |||||||| | Sbjct 102054 TTAGATAAAATCTCTTTATTTTCTTAAATTGTCTTATTGTGAATCCTTCTTTTGATTCTC 101995 Query 278883 AAACGAAAGATTTCCTAACTAC 278904 |||| |||||| || ||||| Sbjct 101994 AAACCAAAGATACTCTTACTAC 101973 >seq28 Length=897071 Score = 141 bits (156), Expect = 2e-28 Identities = 245/351 (70%), Gaps = 9/351 (3%) Strand=Plus/Plus Query 131789 CCTGCAATTAAAAAGAAAGCAGAATGGGCTATTAAATGGATTCAAGATGATTCCGCTAAT 131848 |||| ||||| ||||| || |||||||| |||| ||||| ||| | | || ||| Sbjct 62517 CCTGTCATTAACAAGAAGGCTCAATGGGCTCTTAAGTGGAT-CAATAACAA--CGATAAC 62573 Query 131849 TTTTCTACAAGACTTGTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTGCTTTC 131908 ||| || | ||||| | ||||||||| | |||||||||||||| ||| |||| Sbjct 62574 TTTGCTTCCAGACTCATTGCTTTTGCTGCCATCGAAGGTATATTCTTCAGTGGTAGTTTC 62633 Query 131909 TGTGCTATCTTTTGGCTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATCAA 131968 ||||| ||||| ||||||||||||||| || ||||| || | | || |||||| || Sbjct 62634 TGTGCCATCTTCTGGCTTAAGAAGCGTTCTTTAATGCCCGGTTTGACCTTCTCCAATGAA 62693 Query 131969 TTCATCTCGAGAGATGAAGCATTGCATACTGAATTTGCTATATTAATCTATAGAAAATTT 132028 |||| || |||||||||| | || ||||| || ||| ||| | || | || Sbjct 62694 CTCATTTCTAGAGATGAAGGCCTCCACACTGATTTCGCTTGTTTATTATACTCCATGTTA 62753 Query 132029 GCTGATAAACT---TGATGAAAATAATATTAAACAACTTATAAGCGAAGCAGTTGATATC 132085 | ||||||| ||||| | ||| | |||| |||| | ||||| || ||||| Sbjct 62754 AATAATAAACTCACCAATGAAGA-AATCTATAACA--TTATCATTGAAGCTGTCGATATT 62810 Query 132086 GAGAAGGAGTTTATTACAGAAGCTTTGCCTTGCAATTTGATTGGGATGAAT 132136 || ||||| || || |||||||| | || | | | ||||| |||||| Sbjct 62811 GAAAAGGAATTCATCTCAGAAGCTCTCCCCGTCGAACTTATTGGAATGAAT 62861 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186807858037325