Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetrahymena_20borealis_20[genbank_20GCA_5F000260095.1_202012-05-01] 325 sequences; 93,506,076 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq81 95.1 3e-14 seq77 89.7 1e-12 seq41 87.8 4e-12 seq105 86.0 1e-11 >seq81 Length=427612 Score = 95.1 bits (104), Expect = 3e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253 || || || || || || || || || ||| |||||||| | ||| || ||| Sbjct 245385 ACTGGTAAGACCATTACCTTAGACGTTGAAGCCTCTGACACTATTGAAAATGTCAAGGCC 245326 Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||| ||||| || ||||| || || || |||||||||||||||| || ||| Sbjct 245325 AAGATCCAAGATAAGGAAGGTATCCCCCCCGATTAATAAAGACTTATCTTCGCTGGTAAG 245266 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 || | ||||| || || || | ||||||||||| |||| || || ||||| |||||| Sbjct 245265 CAACTTGAAGACGGCAGAACCCTTTCCGATTACAACATCCAAAAGGAATCTACCCTTCAC 245206 Query 206374 CTTGTTTTGAGA 206385 | || |||||| Sbjct 245205 TTAGTCTTGAGA 245194 >seq77 Length=437778 Score = 89.7 bits (98), Expect = 1e-12 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253 || || || || |||||| | || || ||| |||||| | | ||| || ||| Sbjct 1897 ACTGGTAAGACCATCACTCTCGATGTTGAAGCCTCTGACTCTATTGAAAATGTCAAGGCT 1838 Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 |||||| |||| || ||||| ||| || || |||||||||| || || || || Sbjct 1837 AAGATTTAAGATAAGGAAGGTATTCCTCCTGATTAATAAAGACTTATTTTTGCTGGTAAA 1778 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 || | ||||||||||| ||| | |||| ||||| | || ||||| |||||||||||| Sbjct 1777 CAACTCGAAGATGGAAGAACTCTTTCCGACTACAATATTCAAAAAGAATCTACTCTTCAC 1718 Query 206374 CTTGTTTTGAGA 206385 | || || ||| Sbjct 1717 TTAGTATTAAGA 1706 Score = 87.8 bits (96), Expect = 4e-12 Identities = 140/201 (70%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| | || || ||||| |||||| | || || ||| |||||| | | ||| Sbjct 1450 AAAACATTGACTGGTAAAACAATCACTCTAGATGTTGAAGCCTCTGACTCTATTGAAAAC 1391 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| |||||| |||| || ||||| ||| || || ||||||| || ||| Sbjct 1390 GTCAAGGCTAAGATTTAAGATAAGGAAGGTATTCCTCCTGATTAATAAAGACTCATTTTC 1331 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || || | | ||||||||||| ||| | | || ||||| | || || || ||| Sbjct 1330 GCTGGTAAATAACTTGAAGATGGAAGAACTCTTTCTGACTACAATATTCAAAAGGAATCT 1271 Query 206365 ACTCTTCACCTTGTTTTGAGA 206385 ||||||||| | || |||||| Sbjct 1270 ACTCTTCACTTAGTATTGAGA 1250 >seq41 Length=642683 Score = 87.8 bits (96), Expect = 4e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 204757 TCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCC 204816 ||| ||||| | ||||||||| || || || || | ||||||||||| | ||| || || Sbjct 166228 TCTTAAAACTAAGTGAAGAGTTGATTCCTTTTGAATATTATAGTCAGAAAGAGTTCTGCC 166169 Query 204817 ATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTT 204854 |||||| || ||||| || ||||||||||| | ||||| Sbjct 166168 ATCTTCAAGTTGCTTACCAGCGAAGATAAGTCTTTGTT 166131 >seq105 Length=326417 Score = 86.0 bits (94), Expect = 1e-11 Identities = 79/100 (79%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 204755 AGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTT 204814 ||||| || || | |||||| ||||| ||||| | || ||||||||||| | ||| ||| Sbjct 7576 AGTCTTAACACTAAGTGAAGGGTAGATTCTTTTTAGATATTATAGTCAGAGATAGTTCTT 7635 Query 204815 CCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTT 204854 |||||||| || |||||||| || || ||||| | || || Sbjct 7636 CCATCTTCAAGTTGCTTTCCTGCAAATATAAGTCTTTATT 7675 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181815878824325