Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetrahymena_20borealis_20[genbank_20GCA_5F000260095.1_202012-05-01] 325 sequences; 93,506,076 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq77 125 6e-24 seq121 98.7 9e-16 seq105 96.9 3e-15 seq41 91.5 1e-13 >seq77 Length=437778 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||| || | ||||| |||||||| || || ||| | ||||| | || || |||||| Sbjct 1465 ATGTAAATCTTTGTTAAAACATTGACTGGTAAAACAATCACTCTAGATGTTGAAGCCTCT 1406 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || |||| || | || || || ||| ||||| || ||||| || || ||| | Sbjct 1405 GACTCTATTGAAAACGTCAAGGCTAAGATTTAAGATAAGGAAGGTATTCCTCCTGATTAA 1346 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 |||||||||||| || || ||| |||| ||||||| |||| | | || |||||| Sbjct 1345 TAAAGACTCATTTTCGCTGGTAAATAACTTGAAGATGGAAGAACTCTTTCTGACTACAAT 1286 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 |||||||| ||||| || |||| ||||| || ||||| |||||||| Sbjct 1285 ATTCAAAAGGAATCTACTCTTCACTTAGTATTGAGATTAAGAGGAGG 1239 Score = 125 bits (138), Expect = 6e-24 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 25173 ACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCA 25232 ||||| || | || || || || || || || || | ||||| |||| || |||||| Sbjct 1923 ACATGTAAATTTTCGTTAAGACTTTGACTGGTAAGACCATCACTCTCGATGTTGAAGCCT 1864 Query 25233 ACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATC 25292 || |||| || | || || || ||| ||||| || ||||| || || ||| Sbjct 1863 CTGACTCTATTGAAAATGTCAAGGCTAAGATTTAAGATAAGGAAGGTATTCCTCCTGATT 1804 Query 25293 AGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACA 25352 | ||||||| |||| | || |||||||||||||||| |||| | | ||| |||| Sbjct 1803 AATAAAGACTTATTTTTGCTGGTAAACAACTCGAAGATGGAAGAACTCTTTCCGACTACA 1744 Query 25353 ATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 |||||||||||||||| || |||| ||||| |||||||| ||||| || Sbjct 1743 ATATTCAAAAAGAATCTACTCTTCACTTAGTATTAAGATTAAGAGGTGG 1695 Score = 98.7 bits (108), Expect = 9e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 25190 AAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAACGATACTATCGAGCAA 25249 || || || || || || | || || |||| || |||||| || |||| || | Sbjct 1678 AAGACTTTGACTGGTAAGACCATTACTCTCGATGTTGAAGCCTCTGACTCTATTGAAAAC 1619 Query 25250 GTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAGCAAAGACTCATTTAC 25309 || || || ||| ||||| || ||||| || || ||| | ||||||| |||| | Sbjct 1618 GTCAAGGCTAAGATTTAAGATAAGGAAGGTATTCCTCCTGATTAATAAAGACTTATTTTC 1559 Query 25310 GGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAATATTCAAAAAGAATCC 25369 | || ||| |||| ||||||| |||| | | ||| |||||||||||||| ||||| Sbjct 1558 GCTGGTAAATAACTTGAAGATGGAAGAACTCTTTCCGACTACAATATTCAAAAGGAATCT 1499 Query 25370 ACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 || |||| ||||| | ||||||||||| || Sbjct 1498 ACTCTTCACTTAGTTCTTAGATTGAGAGGTGG 1467 >seq121 Length=281021 Score = 98.7 bits (108), Expect = 9e-16 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 25268 GATAAAGAGGGTATACCGCCCGATCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAA 25327 ||||| || ||||| || || ||| || |||||||||||| | || || ||||| ||| Sbjct 224773 GATAAGGAAGGTATCCCTCCTGATTAGTAAAGACTCATTTTTGCTGGTAAGCAACTTGAA 224714 Query 25328 GATGATAGAAATGTCAGCGATTACAATATTCAAAAAGAATCCACCATTCATTTAGTGTTA 25387 |||| |||| | || || || ||||| ||||||||| ||| |||||||||| | Sbjct 224713 GATGGAAGAACTATCTCTGACTATAATATCTCAAAAGAATCAACCCTTCATTTAGTTCTT 224654 Query 25388 AGATTGAGAGGAGG 25401 ||||||||||| || Sbjct 224653 AGATTGAGAGGTGG 224640 >seq105 Length=326417 Score = 96.9 bits (106), Expect = 3e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 25184 TTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAACGATACTATC 25243 ||||||||||| | || ||||| | ||||| | || | | || ||||| || Sbjct 7784 TTTGTAAAAACTCTTACAGGAAAGACTATCACTCTTGATATTAATTCCGCTGATACCATT 7725 Query 25244 GAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAGCAAAGACTC 25303 || | || ||| ||||| ||||| || ||||| || || ||| | ||||||| Sbjct 7724 GAAAATGTTAAAACTTAAATTCAAGATAAGGAAGGTATCCCTCCTGATTAATAAAGACTT 7665 Query 25304 ATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAATATTCAAAAA 25363 || | | || || ||||| ||||||| |||| | || || || ||||| ||||| Sbjct 7664 ATATTTGCAGGAAAGCAACTTGAAGATGGAAGAACTATCTCTGACTATAATATCTAAAAA 7605 Query 25364 GAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 ||||| ||| |||| |||||||||||| | ||||| || Sbjct 7604 GAATCTACCCTTCACTTAGTGTTAAGACTAAGAGGTGG 7567 Score = 89.7 bits (98), Expect = 5e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||| | || ||||||||||| | || ||||| | ||||| | || | | || Sbjct 8252 ATGTAGGTTTTTGTAAAAACTCTTACAGGAAAGACTATCACTCTTGACATTAATTCCGCT 8193 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 |||||||| || | || ||| ||||| ||||| || ||||| || || ||| | Sbjct 8192 GATACTATTGAAAATGTTAAAACTTAAATTCAAGATAAGGAAGGTATCCCTCCTGATTAA 8133 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 ||||||| |||| | || || ||||| ||||||| |||| | || ||||| ||| Sbjct 8132 TAAAGACTTATTTTTGCAGGAAAGCAACTTGAAGATGGAAGAACTATCTCTGATTATAAT 8073 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTT 25386 || |||||||||| || | |||||||| || Sbjct 8072 ATCTAAAAAGAATCAACTCTCCATTTAGTATT 8041 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||| || | ||||| ||||||||||| ||||| | || || | || ||| | | Sbjct 8480 ATGTAAATATTTGTTAAAACATTAACTGGAAAGACTATTACTCTAGATGTCTAGTCTTCA 8421 Query 25235 GATACTATCGAGCA-AGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 || |||| || | | |||||| || | || ||||| || ||||| || || ||| | Sbjct 8420 GACTCTATAGAAAATATTAAAACTAAGATATAA-GATAAGGAAGGTATCCCTCCTGATTA 8362 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 ||||||| |||| | || || ||||||| |||| |||| | || || || || Sbjct 8361 ATAAAGACTTATTTTTGCTGGTAAGTAACTCGATGATGGAAGAACTATCTCTGACTATAA 8302 Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 ||| |||||||| || | |||||||| | ||||||||||| || Sbjct 8301 CATTTCTAAAGAATCAACACTCCATTTAGTTCTTAGATTGAGAGGTGG 8254 >seq41 Length=642683 Score = 91.5 bits (100), Expect = 1e-13 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 25274 GAGGGTATACCGCCCGATCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGAT 25333 || ||||| || || ||| | |||||||| || | || || || ||||| ||||||| Sbjct 166112 GAAGGTATTCCCCCTGATTAACAAAGACTTATCTTCGCTGGTAAGCAACTTGAAGATGGC 166171 Query 25334 AGAAATGTCAGCGATTACAATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTG 25393 |||| | | || || ||||||||||| ||||| || |||| ||||| |||||||| Sbjct 166172 AGAACTCTTTCTGACTATAATATTCAAAAGGAATCAACTCTTCACTTAGTTTTAAGATTA 166231 Query 25394 AGAGGAGGAAAATGA 25408 ||||| || ||||| Sbjct 166232 AGAGGTGGCTAATGA 166246 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445092591804000