Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetrahymena_20borealis_20[genbank_20GCA_5F000260095.1_202012-05-01] 325 sequences; 93,506,076 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq28 113 6e-19 >seq28 Length=897071 Score = 113 bits (124), Expect = 6e-19 Identities = 275/408 (67%), Gaps = 13/408 (3%) Strand=Plus/Plus Query 1455870 GACGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCAT 1455929 ||| |||| || || ||||| || | ||||| || ||| ||||| || ||||| || Sbjct 62277 GACAACGAACGTCACTTCATTAAATATGTCCTTGC-TTTCTTCGCTGCTTCTGATGGTAT 62335 Query 1455930 CGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTT 1455989 ||| || ||||| |||| || ||| || |||||| | || || || ||| Sbjct 62336 CGTCCTTGAAAACCTCGCCGAGTAATTCATGTGTGAAGTCCAAATCCCCGAAGCTCGTGC 62395 Query 1455990 GTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGAT 1456049 || || || ||| | || ||||| ||||| |||||||||||||| ||||| || |||| Sbjct 62396 CTTCTATGGTTTCTAAATTGCCATGGAAAATATCCACTCTGAAACTTACTCCCTTTTGAT 62455 Query 1456050 CGACACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCTTTCGCGCCATC-GACACGG 1456108 |||||||| | ||||| || ||||| ||| |||| | | || | | | Sbjct 62456 TGACACCTATATTAAGGATGAAACTGAAAAGGAATTCCT-TTTCAAGGCCTCTCAAAATG 62514 Query 1456109 TGCC-GTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTC 1456167 | || ||| | | || ||||| | ||||| | ||||||||||| || | | Sbjct 62515 TCCCTGTC-ATTAACAAGAAGGCTCAATGGGCTCTTAAGTGGATCAATAA------CAAC 62567 Query 1456168 GA-CACTTTGCCGAGCGGCTCGTCGGCTTTGCCG-CGTCGAGGGCATCTTTTTCTCGGGC 1456225 || ||||||| | ||| | | ||||| | | |||| || || || ||| || Sbjct 62568 GATAACTTTGCTTCCAGACTCATTGCTTTTGCTGCCATCGAAGGTATATTCTTCAGTGGT 62627 Query 1456226 AGTTTCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGT 1456273 |||||||| |||||||| ||||| |||||||| | ||||||||| Sbjct 62628 AGTTTCTGTGCCATCTTCTGGCTTAAGAAGCGTTCTTTAATGCCCGGT 62675 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177779853152650