Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetrahymena_20borealis_20[genbank_20GCA_5F000260095.1_202012-05-01] 325 sequences; 93,506,076 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq2 295 9e-75 >seq2 Length=2195051 Score = 295 bits (326), Expect = 9e-75 Identities = 504/731 (69%), Gaps = 0/731 (0%) Strand=Plus/Minus Query 69490 TCTTTTTCATATTGTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCA 69549 || |||||||||| ||||| || ||| |||||||| |||||||||||| | |||| Sbjct 428876 TCATTTTCATATTTAGTATAAAGAGCTTCAAATTCATCACCCCAAACATCAGGAAGTCCA 428817 Query 69550 GGACATTCATTTGGACACATCAATGACCACACATCATCATCCTTAACTCGTTTCATAAAT 69609 || |||||||| |||||||| | | ||| ||||| | | |||| ||||| || Sbjct 428816 GGGCATTCATTAGGACACATAAGAGTCCATTTTCCATCAGCAATGACTCTCTTCATGAAA 428757 Query 69610 AGATCGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTTTCTTCATTTCCTGTA 69669 ||||||||||||||||| || | || | |||||| | ||| | |||||| || || | Sbjct 428756 AGATCGGGAATCCAAAGTGCAAAGAATAAATCTCTAGCTCTTTATTCTTCCTTACCGTGA 428697 Query 69670 ttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCC 69729 || || || | | || || || | || |||||||||||| ||||||| || | || Sbjct 428696 TTCTTCTTCAACTAAAGGAAGTCGAAAACATCAGAATGCCAAGGTTCTAAGTAAACGGCA 428637 Query 69730 ATGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACT 69789 | | ||| || || || || ||||| | ||||| ||||| | ||| |||| Sbjct 428636 AAGGAACCCTTTCTCTTGCCACCACCTTGATCAACATATCTAGCAGTATCATTGAAGACA 428577 Query 69790 CTCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTT 69849 | ||||| |||| || |||||||| |||||||||| || ||||||||| |||| Sbjct 428576 CGGAGCATAGGAACAAGTCCATTAGAAATACCATTTGTACCTCTAATATAACTATCTCTA 428517 Query 69850 GCGCGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAA 69909 || | |||||| || || ||||| || || ||||| | |||||||||| |||||| Sbjct 428516 GCTCTGATATTATGAACGGAAAGACCAATACCACCTGCACTCTTAGAGATTAAAGCACAT 428457 Query 69910 CGTTTCAATGTGTCATATATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAG 69969 | || | |||||||| ||||| |||||| ||| || ||| | ||| | ||||| Sbjct 428456 TGCTTAAGAGTGTCATAAATACCGTCTATGGAATCTGCTTACATTTGAAGTAAGAAACAA 428397 Query 69970 CTAGACATTTGATGATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAAC 70029 ||| ||||| | | ||| || | ||| || | ||||||| || ||||||||| Sbjct 428396 CTACTCATTTAGGGCTTGGGAGTACCTGAATTGAAAAGAGTAGGAGTAGCATGAGTGAAC 428337 Query 70030 CATTTTTCAGAAAGCAGATTGTATGTTTCAATAGCTGATTCTATATCCCACTGATGAATT 70089 || |||||| | | ||| || || | || ||| | ||| | || |||||| Sbjct 428336 CACTTTTCACTCATTAAATTATAAGTACGGAAGGCACTTTCCAAATCTCTCTTATGAATA 428277 Query 70090 CCTATCGCGACACGCATCAACATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTC 70149 || || | || | ||| ||||| | ||||||| ||| | ||||| ||| | ||| Sbjct 428276 CCAATAGAAACTCTCATTAACATTTATTGAGGTCTTTCAGCAATTTTACCATTCAATTTT 428217 Query 70150 AACAGGTATGATTTTTCCAGAGTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTCG 70209 || || || ||| ||||| || || ||||| | | || | | | ||||| || Sbjct 428216 AAAAGATAACTACGTTCGAGAGTCTTGAAACCAAAGAAATCATAAGTATAATCTCTATCA 428157 Query 70210 TAAATAATAAC 70220 ||| ||||||| Sbjct 428156 TAATTAATAAC 428146 Score = 152 bits (168), Expect = 7e-32 Identities = 490/753 (65%), Gaps = 12/753 (2%) Strand=Plus/Minus Query 68449 TAGAAATGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATATGAATATTCATCGAT 68508 ||||| |||||| || | || || || ||||| | ||||||||||| | ||| Sbjct 430067 TAGAAGTGCATAGAGGTAATCTTAGAGTATGAGGGATCAGAGATATGAATATTAAGAGAT 430008 Query 68509 TGACTTTGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATAATACTCTTTTGAGGA 68568 | | || || || |||| | | | | || | || |||||| |||||||| Sbjct 430007 TAAGATTAGTCAATAAAAGGACTACGGCCAACAGCGAGATTAATAATAGCCTTTTGAGAT 429948 Query 68569 ATTTCCCAAATAGTCTTAAAAATCTGTTTGATATCATCTGGAAGGCTCG-TATT--TTGA 68625 | |||||||| || ||| | | | || |||||||| |||| | |||| |||| Sbjct 429947 ACTTCCCAAACTGTTTTATAGAGTTACTTAATATCATCGGGAATATCAGCTATTGTTTGA 429888 Query 68626 ATGGATCCACCATCGGATATAATTATATTCTTGATCTCATCATTCCACAATTTTCTCTCC 68685 | || ||| | | | | | ||| || || | |||||| | ||||| || Sbjct 429887 ACAGAGCCATTGTAAGCAAGGAGTTAATTTTTAATTGAAGGATTCCAAAGATTTCTTTCA 429828 Query 68686 GTTAAAACTCTAAGGAGATGCGGATTAACTATTTGAAATTCCCCAGATAACACTCTACGA 68745 ||||| || || ||||| ||||| | |||||| |||| | |||||||| Sbjct 429827 ATTAAATCTTAAACAAGATGAGGATTGATACAAACAAATTCACCAGCAAGGACTCTACGG 429768 Query 68746 GTGTAAATATTACTGGTATATGGTTCCACAGATTCATTATTTCCCAGAATTTGAGCAGTT 68805 || |||| ||| ||||| ||||| | ||||| ||| |||| ||| | || || Sbjct 429767 GTATAAAGATTGGAAGTATAGGGTTCAAATGATTCGCAATTACCCAAAATCTAAGAGGTA 429708 Query 68806 GATGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCATGTGTTATGATTTTA 68865 || ||||| |||||||| || | ||| | | ||| | | ||||||| | ||||| Sbjct 429707 GAAGCAGTAGGCATAGGAGCAATCAAAAGAGAATTACGCATACCATGTTCAACAATTTTT 429648 Query 68866 TCTTTTAGATGTTTCCAATCCCAAAGATCAGAT---GGTACAACATTCCAAAGATCGTAT 68922 | || | | | |||||| | | || | || | ||||| | |||| || Sbjct 429647 TTCTTCAAACCATCCCAATCGTATCCACCATAAACAGGCTTATAGTTCCATAAATCGAAT 429588 Query 68923 TGTAGAATT--CCGTTACTTGCATATGATCCATTATATGTTTCATAAGGTCCTTCCTGTT 68980 | ||| || || || ||| ||||| || |||||||||||| |||||||| | Sbjct 429587 T--AGAGTTGACCCTTTGAAGCAGGAGATCCCTTGAATGTTTCATAAGCTCCTTCCTTTA 429530 Query 68981 CAGCTAGTTCACAACTTGCCTCTAATGCACCGTAATAAATTGTTTCGAAAATCTTCTTAT 69040 ||| | ||| | || || | ||||| |||| ||||||||||| || | | || Sbjct 429529 TAGCAATTTCCATAGAAGCTTCACAAGCACCAAAATAGATTGTTTCGAAGATTCTTTCAT 429470 Query 69041 TGAGATCTTGTGCTTCTAGACTATCGAATGGATAATGTAAAAG-AATAAATGCATCTGCC 69099 | | | | ||||| ||| ||||| | | | | | | |||||| ||||| || Sbjct 429469 TAATAATCTAAGCTTCGTCACTTTCGAAAGAA-ATTCTCATCTTAATAAAGGCATCAGCA 429411 Query 69100 AATCCCTGAACCCCAATACCGATAGGTCTATGTCTCTTATTTGAACTTTCAGCTTCTGGA 69159 | || | ||| |||||||| |||||||||||||| ||||||| ||| |||||||||| Sbjct 429410 AGACCTTAAACACCAATACCAATAGGTCTATGTCTAATATTTGACTTTTTAGCTTCTGGA 429351 Query 69160 ATAGGATAATAATTAATATCTATAATTTTATTA 69192 | ||| |||||||| ||| |||| | |||| Sbjct 429350 ACAGGGTAATAATTTTCATCAATAACCTGATTA 429318 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686906009433000