Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetrahymena_20borealis_20[genbank_20GCA_5F000260095.1_202012-05-01] 325 sequences; 93,506,076 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq9 96.9 3e-15 >seq9 Length=1304334 Score = 96.9 bits (106), Expect = 3e-15 Identities = 264/402 (66%), Gaps = 2/402 (0%) Strand=Plus/Minus Query 40855 ATAGGGATGAAGGTGATCTTGGTCCTGTTTATGGATTTCAGTCGCGACATTTTGGAGCAA 40914 |||| | ||||| ||| | ||||| |||||||| || | | | |||||||||| ||| Sbjct 106342 ATAGATAAGAAGGCGATTTAGGTCCAGTTTATGGCTTCTAATGGAGACATTTTGGTGCAG 106283 Query 40915 AATATGACACTATGTACTCTGATTAT-ACCAATAAAGGAATGGATCAATTACAGTGCGTT 40973 ||||| | |||| | || ||||| | |||| ||| | || | || || | Sbjct 106282 AATATAAAGATATGCATACTAATTATTAAGGATAA-GGAGTAGACTAGCTATAGGATTTA 106224 Query 40974 ATAGATACGATTAAATCCGATCCCGATAGCCGACGTATAATATTGTGCGCGTGGAACCCA 41033 || | || || || |||| ||||| || | || || || | || ||||| Sbjct 106223 ATTAACACCATAAAGAAAAATCCAGATAGTAGAAGAATGATTATGAGTGCATGGAATGTG 106164 Query 41034 ACGGACGTACATTTGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGC 41093 | || | | ||||||||| | || || || || | | || | ||||| || Sbjct 106163 AAAGATCTTCCATTGATGGCACTACCTCCCTGCCACGTAATGAGTTAATTTTATGTAAAT 106104 Query 41094 AATGGTGAACTGTCATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCG 41153 ||||| || | || ||||| |||||||| |||| |||||| |||| | || Sbjct 106103 GATGGTAAATTAAGCTGCATGATGTATTAAAGATCATGTGATATGGGATTAGGAATTCCA 106044 Query 41154 TTTAACATAGCGAGTTATGCTCTGCTCACGTATATGATTGCACACGTTACCAATTTAAAA 41213 ||||| || || ||||||||| |||| || ||||||||||||| | || | || ||| Sbjct 106043 TTTAATATTGCTAGTTATGCTTTGCTAACTCATATGATTGCACATATAACATAATTGAAA 105984 Query 41214 CCTGGTGAATTTGTTCACACGTTAGGAGATGGACATATTTAC 41255 || ||||| || || ||||| |||| ||| ||||| Sbjct 105983 GTAGGAGAATTCGTCCATGTTTTAGGTGATGCTCATGTTTAC 105942 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397454425701625