Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetrahymena_20borealis_20[genbank_20GCA_5F000260095.1_202012-05-01] 325 sequences; 93,506,076 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq2 116 5e-21 >seq2 Length=2195051 Score = 116 bits (128), Expect = 5e-21 Identities = 164/230 (71%), Gaps = 3/230 (1%) Strand=Plus/Minus Query 111161 GTAACAATCTTTGTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTG 111220 ||||| ||||| | ||||||| ||| |||| |||||| | | | | ||| || Sbjct 429228 GTAACTATCTTAGCAATTTCATAAAGCTTTTGGTAATCATATTCTCTATT---TTCCTTA 429172 Query 111221 ACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTG 111280 ||| | || ||| | ||| || || ||||||||||| || |||||| | ||| Sbjct 429171 ACAAATTTAACAAGAGAGATAGAAGCTAAATTGCAAACTGCAACCTCATCAGGGGCAGTG 429112 Query 111281 TACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTA 111340 || || | |||||| || || | ||| ||||| ||||| || || | || | ||| || Sbjct 429111 TATTCAACAATTTCAGTGCAGAGGTTAGAACTTTTAATTGTACCTAGGTTTTATTGATTT 429052 Query 111341 CTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTC 111390 ||| ||||||| ||||||||||||||||||||||| || ||||| || Sbjct 429051 GACTTTCTGTTGCAAGCATCCTTGTAGAGCATGTAGGGAGTGCCCGTTTC 429002 Score = 111 bits (122), Expect = 2e-19 Identities = 353/538 (66%), Gaps = 11/538 (2%) Strand=Plus/Minus Query 111461 TCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCC 111520 || || || || || || |||||||| || |||||| | || | || || || || Sbjct 428870 TCATATTTAGTATAAAGAGCTTCAAATTCATCACCCCAAACATCAGGAAGTCCAGG-GCA 428812 Query 111521 TTGTCT-GGACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTC 111579 || | ||||| | ||||| ||||| ||| | | || | |||||||||||| || Sbjct 428811 TTCATTAGGACACATAAGAGTCCATTTTCCATCAGCAATGACTCTCTTCATGAAAAGATC 428752 Query 111580 TGGAATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAG 111639 |||||||| || | | || | ||||||| | ||||| | ||| || || Sbjct 428751 GGGAATCCAAAGTGCAAAGAATAAATCTCTAGCTCTTTATTCTTCCTTACCGTGATT-CT 428693 Query 111640 TCGT-AACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAG 111698 || | |||| |||||| || | | ||| | ||||| || || | || || || | | Sbjct 428692 TCTTCAACTAAAGGAAGTCGAAAACATCAGAATGCCAAGGTTCTAAGTAAACGGCAAAGG 428633 Query 111699 ATCCCTTTC---GACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAA 111755 | ||||||| | ||| |||||| ||||| | || || | || || || || | Sbjct 428632 AACCCTTTCTCTTGCCACCACCTTGATCAACATATCTAGCAGTATCATTGAAGACACGGA 428573 Query 111756 GCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTC 111815 |||| |||| || |||| || ||||||||| || | |||| | | | |||| Sbjct 428572 GCATAGGAACAAGTCCATTAGAAATACCATTTGTACCTCTAATATAACTATCTCTAGCTC 428513 Query 111816 TCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCG 111875 | | || ||| | | | |||||||| || || | ||| |||||| ||||| | | Sbjct 428512 TGATATTATGAACGGAAAGACCAATACCACCTGCACTCTTAGAGATTAAAGCACATTGCT 428453 Query 111876 TAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTT--GTTGGCGATAAGGAAGCAACT 111933 ||||||| |||| ||||||| || || | || ||| || | ||| ||| ||||| Sbjct 428452 TAAGAGTGTCATAAATACCGTCTATGGAAT-CTGCTTACATTTGAAGTAA-GAAACAACT 428395 Query 111934 GGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAAC 111991 ||| | || | || ||||| | |||||| || || || || || ||| ||||| Sbjct 428394 ACTCATTTAGGGCTTGGGAGTACCTGAATTGAAAAGAGTAGGAGTAGCATGAGTGAAC 428337 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628029448620000