Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetrahymena_20borealis_20[genbank_20GCA_5F000260095.1_202012-05-01] 325 sequences; 93,506,076 total letters Query= NC_028099.1 Length=122522 Score E Sequences producing significant alignments: (Bits) Value seq9 96.9 3e-15 >seq9 Length=1304334 Score = 96.9 bits (106), Expect = 3e-15 Identities = 264/400 (66%), Gaps = 7/400 (2%) Strand=Plus/Plus Query 111721 TGATTTAAATAAACATGCGCATCTCCTATACAATGGATCAATTCCCAAGGCTCCAAACCA 111780 || ||| | |||||||| ||||| |||| | ||||| ||||| | | ||| Sbjct 105934 TGGTTTGAGTAAACATGAGCATCACCTAAAACATGGACGAATTCTCCTACTTTCAATTAT 105993 Query 111781 GTGATGTGTGCAATCATGTATGTGAGTAGACTGTAACTAGCAATGTTAAATGGCACACCT 111840 || || ||||||||||| | || || | | ||||||||||| |||||||| | ||| Sbjct 105994 GTTATATGTGCAATCATATGAGTTAGCAAAGCATAACTAGCAATATTAAATGGAATTCCT 106053 Query 111841 AGGCCCATATCTCCCGATCTTTGATATAGCTGACATGATAGTTTATTTTGTGACACATAA 111900 | |||||||| | ||||||| ||| | | || || |||| | |||||| Sbjct 106054 AATCCCATATCACATGATCTTTAATACATCATGCAGCTTAATTTACCATCATTTACATAA 106113 Query 111901 AATTGACAAAGTACATGACAAGGAGGCAATGCCATCCCATTCATAAAGGGTC----CCCA 111956 |||| || | ||| || || ||||| | |||||| | || | | || ||| Sbjct 106114 AATTAACTCATTACGTGGCAGGGAGGTAGTGCCAT-CAATGGAAGATCTTTCACATTCCA 106172 Query 111957 TGCACACATGATCATCCTTCTGCTGTAGCGATTATGTTCAATGTCGTGTATGACATTCAA 112016 ||||| ||| ||||| ||||| || | |||| | | ||| || || | || | | Sbjct 106173 TGCACTCATAATCATTCTTCTACTATCTGGATTTTTCTTTATGGTGTTAATTAAATCCTA 106232 Query 112017 GAGCTGGTCTATCCCTTTACCAGTATAATCCGCCTGACAT-CCAGTGTATGTTGCCCCAT 112075 |||| ||||| |||| || ||||| | || ||| | | ||| ||| ||| Sbjct 106233 TAGCTAGTCTACTCCTTATCCTTAATAATTAGTATG-CATATCTTTATATTCTGCACCAA 106291 Query 112076 AGTGTCTCCATTGGAATCCATAAATAGGCCCCAGATCTCC 112115 | |||||||||| ||| ||||||| || || | ||| || Sbjct 106292 AATGTCTCCATTAGAAGCCATAAACTGGACCTAAATCGCC 106331 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 391944047527975