Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetrahymena_20borealis_20[genbank_20GCA_5F000260095.1_202012-05-01] 325 sequences; 93,506,076 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq77 125 8e-24 seq121 107 2e-18 seq81 102 9e-17 seq2 98.7 1e-15 seq105 86.0 7e-12 seq24 84.2 2e-11 >seq77 Length=437778 Score = 125 bits (138), Expect = 8e-24 Identities = 164/226 (73%), Gaps = 1/226 (0%) Strand=Plus/Minus Query 27393 AAATATTACTATA-ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTG 27451 ||||| || || | ||| |||| || || ||||| | || || ||||| || ||||| | Sbjct 1935 AAATAATAATACACATGTAAATTTTCGTTAAGACTTTGACTGGTAAGACCATCACTCTCG 1876 Query 27452 AGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAA 27511 | ||||| | ||| |||| |||| | |||||||| ||| | || ||||| || | Sbjct 1875 ATGTTGAAGCCTCTGACTCTATTGAAAATGTCAAGGCTAAGATTTAAGATAAGGAAGGTA 1816 Query 27512 TTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCC 27571 ||||||| || | | | || |||||||||||||| |||||||| |||| | || | Sbjct 1815 TTCCTCCTGATTAATAAAGACTTATTTTTGCTGGTAAACAACTCGAAGATGGAAGAACTC 1756 Query 27572 TAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTT 27617 | | ||||| ||| | ||||| ||||| |||||||| |||| || Sbjct 1755 TTTCCGACTACAATATTCAAAAAGAATCTACTCTTCACTTAGTATT 1710 Score = 109 bits (120), Expect = 6e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||| |||||||||| || || | || || || || || ||||| || ||||| | | Sbjct 1465 ATGTAAATCTTTGTTAAAACATTGACTGGTAAAACAATCACTCTAGATGTTGAAGCCTCT 1406 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || |||| ||| | |||||||| ||| | || ||||| || |||||||| || | Sbjct 1405 GACTCTATTGAAAACGTCAAGGCTAAGATTTAAGATAAGGAAGGTATTCCTCCTGATTAA 1346 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 | | || ||||| |||||||| |||| || |||| | || || | ||||| ||| Sbjct 1345 TAAAGACTCATTTTCGCTGGTAAATAACTTGAAGATGGAAGAACTCTTTCTGACTACAAT 1286 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTG 27618 | ||||||||||| |||||||| |||| ||| Sbjct 1285 ATTCAAAAGGAATCTACTCTTCACTTAGTATTG 1253 Score = 102 bits (112), Expect = 9e-17 Identities = 139/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 27421 AAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAAT 27480 ||||| | || || ||||| |||||||| || ||||| | ||| |||| ||| Sbjct 1678 AAGACTTTGACTGGTAAGACCATTACTCTCGATGTTGAAGCCTCTGACTCTATTGAAAAC 1619 Query 27481 TTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTT 27540 | |||||||| ||| | || ||||| || |||||||| || | | | || ||||| Sbjct 1618 GTCAAGGCTAAGATTTAAGATAAGGAAGGTATTCCTCCTGATTAATAAAGACTTATTTTC 1559 Query 27541 GCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCC 27600 |||||||| |||| || |||| | || || | ||||| ||| | ||||||||||| Sbjct 1558 GCTGGTAAATAACTTGAAGATGGAAGAACTCTTTCCGACTACAATATTCAAAAGGAATCT 1499 Query 27601 ACTCTTCATCTAGT 27614 |||||||| |||| Sbjct 1498 ACTCTTCACTTAGT 1485 >seq121 Length=281021 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||| |||| ||||| || || | || || |||||| ||||||| || ||| ||||| Sbjct 224866 ATGTAAATATTTGTTAAAACATTAACTGGTAAGACTGTTACTCTAGATGTTTAGTCATCA 224807 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || || | |||| | || |||| || | || ||||| || || ||||| || || Sbjct 224806 GACTCTATAGAAAATATCAAAACTAAGATATAAGATAAGGAAGGTATCCCTCCTGATTAG 224747 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 | | || |||||||||||||||||||| || |||| | || | | ||||||||| Sbjct 224746 TAAAGACTCATTTTTGCTGGTAAGCAACTTGAAGATGGAAGAACTATCTCTGACTATAAT 224687 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGT 27614 || ||| ||||| || |||||| |||| Sbjct 224686 ATCTCAAAAGAATCAACCCTTCATTTAGT 224658 Score = 93.3 bits (102), Expect = 5e-14 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 27477 AAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAAT 27536 |||| | ||||| || ||| | || || || || |||||||||||||| || | || || Sbjct 223833 AAATGTTAAGGCAAAGATTTAAGATAAAGAAGGTATTCCTCCAGACCAATAGAGACTTAT 223774 Query 27537 TTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGA 27596 ||||||||||||| |||| ||||||| | || | ||||||||| || |||| || Sbjct 223773 TTTTGCTGGTAAGTAACTAGAGGATGGAAGAACTATCTATGACTATAATATCTAAAAAGA 223714 Query 27597 ATCCACTCTTCATCTAGTCTT 27617 || || ||||| |||| || Sbjct 223713 CTCTACCCTTCACTTAGTGTT 223693 >seq81 Length=427612 Score = 102 bits (112), Expect = 9e-17 Identities = 151/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||| |||| || || ||||| | || || ||||| ||||| | || ||||| | Sbjct 245410 AATGTAAATTTTCGTTAAGACTTTAACTGGTAAGACCATTACCTTAGACGTTGAAGCCTC 245351 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||| | |||| |||| | ||||| || || || || ||||| || || || || || | Sbjct 245350 TGACACTATTGAAAATGTCAAGGCCAAGATCCAAGATAAGGAAGGTATCCCCCCCGATTA 245291 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 | | || || || |||||||||||||| || || | | ||||| | || || || Sbjct 245290 ATAAAGACTTATCTTCGCTGGTAAGCAACTTGAAGACGGCAGAACCCTTTCCGATTACAA 245231 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTG 27618 ||||||||||||| || ||||| |||||||| Sbjct 245230 CATCCAAAAGGAATCTACCCTTCACTTAGTCTTG 245197 >seq2 Length=2195051 Score = 98.7 bits (108), Expect = 1e-15 Identities = 111/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 80908 GACGCCAGATTGCACACGGCCACCTCTTCAGCATCTGTAAACTCGACGATTTCCGTGCAC 80967 || || | |||||| || || ||||| |||| | || | || || ||||| ||||| Sbjct 429150 GAAGCTAAATTGCAAACTGCAACCTCATCAGGGGCAGTGTATTCAACAATTTCAGTGCAG 429091 Query 80968 AAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTGCAAGCGTCC 81027 | |||||| ||||||||||| ||||||| || |||||||| ||||||||| ||| Sbjct 429090 AGGTTAGAACTTTTAATTGTACCTAGGTTTTATTGATTTGACTTTCTGTTGCAAGCATCC 429031 Query 81028 TTGTAGCACATGTACGGGGTACCGGTCTC 81056 |||||| |||||| || || || || || Sbjct 429030 TTGTAGAGCATGTAGGGAGTGCCCGTTTC 429002 >seq105 Length=326417 Score = 86.0 bits (94), Expect = 7e-12 Identities = 163/237 (69%), Gaps = 5/237 (2%) Strand=Plus/Minus Query 27380 aaaaaaTGGCCAGAAATATTACTATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGA 27439 ||||||| || ||| | | ||| ||| |||| ||||| || || | || || |||| Sbjct 8505 AAAAAATTAACAAAAACAAT-CTACTATGTAAATATTTGTTAAAACATTAACTGGAAAGA 8447 Query 27440 CTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGG 27499 |||||||||| || || |||| || || | |||| | || |||| || | | Sbjct 8446 CTATTACTCTAGATGTCTAGTCTTCAGACTCTATAGAAAATATTAAAACTAAGATATAAG 8387 Query 27500 ACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGG 27559 | ||||| || || ||||| || | | | || ||||||||||||||| ||||||| | Sbjct 8386 ATAAGGAAGGTATCCCTCCTGATTAATAAAGACTTATTTTTGCTGGTAAGTAACTCGATG 8327 Query 27560 ATGATCGTACCCTAGCAGACTATA--ATGTCCAAAAGGAATCCACTCTTCATCTAGT 27614 ||| | || | | ||||||| || || ||| ||||| || || ||| |||| Sbjct 8326 ATGGAAGAACTATCTCTGACTATAACATTTCTAAA--GAATCAACACTCCATTTAGT 8272 >seq24 Length=964434 Score = 84.2 bits (92), Expect = 2e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||| || || || || || || || || || |||||| | || ||||| | Sbjct 626515 AATGCAAATTTTCGTTAAAACCCTCACTGGTAAAACCATTACTTTGGACGTTGAAGCTTC 626574 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 |||| |||| ||| | |||||||| || || |||||||| || || || || || | Sbjct 626575 CGATACTATTGAAAACGTCAAGGCTAAGATCCAAGACAAGGAAGGTATCCCCCCCGATTA 626634 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGA 27560 || | || || || |||||||||||||| || || Sbjct 626635 ACAAAGACTTATCTTCGCTGGTAAGCAACTTGAAGA 626670 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570308083114000