Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetrahymena_20borealis_20[genbank_20GCA_5F000260095.1_202012-05-01] 325 sequences; 93,506,076 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq81 149 1e-30 seq77 143 6e-29 seq105 141 2e-28 seq24 102 2e-16 seq41 95.1 3e-14 seq135 91.5 3e-13 >seq81 Length=427612 Score = 149 bits (164), Expect = 1e-30 Identities = 189/261 (72%), Gaps = 7/261 (3%) Strand=Plus/Plus Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958 ||| | ||| | |||||| || || || ||||||||||| ||||| | |||||| || || Sbjct 245194 TCTCAAGACTAAGTGAAGGGTAGATTCCTTTTGGATGTTGTAATCGGAAAGGGTTCTGCC 245253 Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018 ||||| || ||||| || ||||||||||| | || || || || || | |||||||| Sbjct 245254 GTCTTCAAGTTGCTTACCAGCGAAGATAAGTCTTTATTAATCGGGGGGGATACCTTCCTT 245313 Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGAT 211078 || |||||||| || || ||||| || ||||||||| |||||| || | || || Sbjct 245314 ATCTTGGATCTTGGCCTTGACATTTTCAATAGTGTCAGAGGCTTCAACGTCTAAGGTAAT 245373 Query 211079 CGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTTATGGTTACTTGATGCTTCTTT 211138 ||||| || || | |||||| || || | |||| || ||| | ||||||| Sbjct 245374 GGTCTTACCAGTTAAAGTCTTAACGAA-------AATTTACATTTCCTTTTTCCTTCTTT 245426 Query 211139 TAAAATATTTTTGTTTTATTT 211159 ||| | ||||| ||| |||| Sbjct 245427 TAATTTCTTTTTTTTTGATTT 245447 >seq77 Length=437778 Score = 143 bits (158), Expect = 6e-29 Identities = 156/207 (75%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958 ||||| || | ||||||||| || |||||||| || || || || | ||| || ||||| Sbjct 1706 TCTTAATACTAAGTGAAGAGTAGATTCTTTTTGAATATTGTAGTCGGAAAGAGTTCTTCC 1765 Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018 |||||| || || || || || || ||||| | || || |||||||||| |||||||| Sbjct 1766 ATCTTCGAGTTGTTTACCAGCAAAAATAAGTCTTTATTAATCAGGAGGAATACCTTCCTT 1825 Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGAT 211078 || | ||||| || || ||||| || | ||||||| |||||| ||||||||||| Sbjct 1826 ATCTTAAATCTTAGCCTTGACATTTTCAATAGAGTCAGAGGCTTCAACATCGAGAGTGAT 1885 Query 211079 CGTCTTTCCCGTGAGAGTCTTTACAAA 211105 ||||| || || | |||||| || || Sbjct 1886 GGTCTTACCAGTCAAAGTCTTAACGAA 1912 Score = 138 bits (152), Expect = 3e-27 Identities = 151/201 (75%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958 ||| || || | ||||||||| || || ||||| || || || || | ||| || ||||| Sbjct 1478 TCTAAGAACTAAGTGAAGAGTAGATTCCTTTTGAATATTGTAGTCGGAAAGAGTTCTTCC 1537 Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018 |||||| || | || || ||||| ||||| | || || |||||||||| |||||||| Sbjct 1538 ATCTTCAAGTTATTTACCAGCGAAAATAAGTCTTTATTAATCAGGAGGAATACCTTCCTT 1597 Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGAT 211078 || | ||||| || |||||||| || | ||||||| |||||| |||||||| || Sbjct 1598 ATCTTAAATCTTAGCCTTGACGTTTTCAATAGAGTCAGAGGCTTCAACATCGAGAGTAAT 1657 Query 211079 CGTCTTTCCCGTGAGAGTCTT 211099 ||||| || || | |||||| Sbjct 1658 GGTCTTACCAGTCAAAGTCTT 1678 Score = 122 bits (134), Expect = 2e-22 Identities = 144/195 (74%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 210911 GTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTG 210970 ||||||||| || || ||||| || || || || | ||| || ||||||||||| || | Sbjct 1262 GTGAAGAGTAGATTCCTTTTGAATATTGTAGTCAGAAAGAGTTCTTCCATCTTCAAGTTA 1321 Query 210971 CTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTT 211030 || || ||||| || || | || || |||||||||| |||||||| || | ||||| Sbjct 1322 TTTACCAGCGAAAATGAGTCTTTATTAATCAGGAGGAATACCTTCCTTATCTTAAATCTT 1381 Query 211031 TTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGT 211090 || |||||||| || | ||||||| |||||| || |||||||| || || || || Sbjct 1382 AGCCTTGACGTTTTCAATAGAGTCAGAGGCTTCAACATCTAGAGTGATTGTTTTACCAGT 1441 Query 211091 GAGAGTCTTTACAAA 211105 | || || ||||| Sbjct 1442 CAATGTTTTAACAAA 1456 >seq105 Length=326417 Score = 141 bits (156), Expect = 2e-28 Identities = 162/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 210897 AGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTT 210956 ||||||| || | |||||| || || ||||||| ||| ||||| || | | || ||| Sbjct 7576 AGTCTTAACACTAAGTGAAGGGTAGATTCTTTTTAGATATTATAGTCAGAGATAGTTCTT 7635 Query 210957 CCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCC 211016 |||||||| || ||||| ||||| || ||||| | || || |||||||| | |||||| Sbjct 7636 CCATCTTCAAGTTGCTTTCCTGCAAATATAAGTCTTTATTAATCAGGAGGGATACCTTCC 7695 Query 211017 TTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTG 211076 || || || || | ||| || ||||| ||||| |||| | | || || |||||| Sbjct 7696 TTATCTTGAATTTAAGTTTTAACATTTTCAATGGTATCAGCGGAATTAATATCAAGAGTG 7755 Query 211077 ATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || |||||||| || ||||| |||||||| | || ||| Sbjct 7756 ATAGTCTTTCCTGTAAGAGTTTTTACAAAAATCTACAT 7793 Score = 136 bits (150), Expect = 9e-27 Identities = 152/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGC 210971 || ||||| || ||||||| ||| |||||||| | | || ||||||||||| || ||| Sbjct 8050 TGGAGAGTTGATTCTTTTTAGATATTATAATCAGAGATAGTTCTTCCATCTTCAAGTTGC 8109 Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031 || ||||| || ||||| | || || |||||||| | |||||||| || || || | Sbjct 8110 TTTCCTGCAAAAATAAGTCTTTATTAATCAGGAGGGATACCTTCCTTATCTTGAATTTAA 8169 Query 211032 TGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTG 211091 ||| || ||||| || || |||| | | || || |||||||| |||||||| || Sbjct 8170 GTTTTAACATTTTCAATAGTATCAGCGGAATTAATGTCAAGAGTGATAGTCTTTCCTGTA 8229 Query 211092 AGAGTCTTTACAAACACCTGCAT 211114 ||||| |||||||| |||| ||| Sbjct 8230 AGAGTTTTTACAAAAACCTACAT 8252 >seq24 Length=964434 Score = 102 bits (112), Expect = 2e-16 Identities = 119/161 (74%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 210957 CCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCC 211016 || ||||| || ||||| || ||||||||||| | ||||| || || || | |||||| Sbjct 626673 CCGTCTTCAAGTTGCTTACCAGCGAAGATAAGTCTTTGTTAATCGGGGGGGATACCTTCC 626614 Query 211017 TTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTG 211076 ||||| |||||||| || |||||||| || || || || |||||| || | ||| Sbjct 626613 TTGTCTTGGATCTTAGCCTTGACGTTTTCAATAGTATCGGAAGCTTCAACGTCCAAAGTA 626554 Query 211077 ATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || || || || ||||| || || || || | |||||||| Sbjct 626553 ATGGTTTTACCAGTGAGGGTTTTAACGAAAATTTGCATTTT 626513 >seq41 Length=642683 Score = 95.1 bits (104), Expect = 3e-14 Identities = 91/117 (78%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958 ||||| || | ||||||||| || || ||||| || ||||| || | ||| || || || Sbjct 166228 TCTTAAAACTAAGTGAAGAGTTGATTCCTTTTGAATATTATAGTCAGAAAGAGTTCTGCC 166169 Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTC 211015 |||||| || ||||| || ||||||||||| | ||||| ||||| |||| ||||| Sbjct 166168 ATCTTCAAGTTGCTTACCAGCGAAGATAAGTCTTTGTTAATCAGGGGGAATACCTTC 166112 >seq135 Length=235529 Score = 91.5 bits (100), Expect = 3e-13 Identities = 97/128 (76%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958 ||||| || | ||| ||||| || || |||| || || || || | |||||| ||||| Sbjct 235402 TCTTAAAACTAAGTGGAGAGTTGATTCCTTTTAAATATTGTAGTCAGAAAGGGTTCTTCC 235461 Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018 |||||| || | ||| || || |||||||| | || ||| || || |||| |||||||| Sbjct 235462 ATCTTCAAGTTACTTACCAGCAAAGATAAGTCTTTATTGATCGGGGGGAATACCTTCCTT 235521 Query 211019 GTCCTGGA 211026 ||| |||| Sbjct 235522 GTCTTGGA 235529 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159147173218625