Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetrahymena_20borealis_20[genbank_20GCA_5F000260095.1_202012-05-01] 325 sequences; 93,506,076 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq77 104 2e-17 seq24 86.0 4e-12 >seq77 Length=437778 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||| | ||||||||||| || | || || || || ||||||||||| ||||| || | Sbjct 1921 ATGTAAATTTTCGTTAAGACTTTGACTGGTAAGACCATCACTCTCGATGTTGAAGCCTCT 1862 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||| || |||||| | || || ||| || || |||||| | || || ||| || Sbjct 1861 GACTCTATTGAAAATGTCAAGGCTAAGATTTAAGATAAGGAAGGTATTCCTCCTGATTAA 1802 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 | | | || ||||| || |||||||| ||||| | | | ||| | ||| ||||| Sbjct 1801 TAAAGACTTATTTTTGCTGGTAAACAACTCGAAGATGGAAGAACTCTTTCCGACTACAAT 1742 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || |||||||| || || | || ||||| ||||| || |||| || Sbjct 1741 ATTCAAAAAGAATCTACTCTTCACTTAGTATTAAGATTAAGAGGTGG 1695 >seq24 Length=964434 Score = 86.0 bits (94), Expect = 4e-12 Identities = 115/160 (72%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 |||||||| |||||||||||||||||||| || ||||| || ||| | || ||||| | Sbjct 626513 AAAATGCAAATTTTCGTTAAAACCCTCACTGGTAAAACCATTACTTTGGACGTTGAAGCT 626572 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | || ||| |||||| | || || || ||||| |||||| | || || ||| Sbjct 626573 TCCGATACTATTGAAAACGTCAAGGCTAAGATCCAAGACAAGGAAGGTATCCCCCCCGAT 626632 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACG 23767 |||| | | || || || || || ||||| ||||||| Sbjct 626633 TAACAAAGACTTATCTTCGCTGGTAAGCAACTTGAAGACG 626672 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338008261165100