Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetrahymena_20borealis_20[genbank_20GCA_5F000260095.1_202012-05-01] 325 sequences; 93,506,076 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq81 178 3e-39 seq77 147 5e-30 seq24 123 6e-23 seq135 114 3e-20 seq105 114 3e-20 seq121 105 2e-17 seq41 100 7e-16 seq9 91.5 4e-13 >seq81 Length=427612 Score = 178 bits (196), Expect = 3e-39 Identities = 170/218 (78%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 ||||| ||| | ||| || || ||||| ||||||| |||||||||| | ||||| || Sbjct 245194 TCTCAAGACTAAGTGAAGGGTAGATTCCTTTTGGATGTTGTAATCGGAAAGGGTTCTGCC 245253 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 ||||| || ||||| |||||||||||||||| || || ||||| || ||||||||||| Sbjct 245254 GTCTTCAAGTTGCTTACCAGCGAAGATAAGTCTTTATTAATCGGGGGGGATACCTTCCTT 245313 Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677 ||||||||||| ||| ||| ||| || ||||| |||| ||| |||||||| || || Sbjct 245314 ATCTTGGATCTTGGCCTTGACATTTTCAATAGTGTCAGAGGCTTCAACGTCTAAGGTAAT 245373 Query 225678 CGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTT 225715 ||||| || || ||||| || | ||| | || ||||| Sbjct 245374 GGTCTTACCAGTTAAAGTCTTAACGAAAATTTACATTT 245411 >seq77 Length=437778 Score = 147 bits (162), Expect = 5e-30 Identities = 155/204 (76%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 225510 GTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTG 225569 ||| ||||| ||||||||||| | |||||| |||| | |||||| |||||||| || || Sbjct 1718 GTGAAGAGTAGATTCTTTTTGAATATTGTAGTCGGAAAGAGTTCTTCCATCTTCGAGTTG 1777 Query 225570 CTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTT 225629 || ||||| || ||||||| || || || || |||||||||||||| |||| ||||| Sbjct 1778 TTTACCAGCAAAAATAAGTCTTTATTAATCAGGAGGAATACCTTCCTTATCTTAAATCTT 1837 Query 225630 TTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689 ||| ||| ||| || | ||| |||| ||| || || | ||||| ||||| || || Sbjct 1838 AGCCTTGACATTTTCAATAGAGTCAGAGGCTTCAACATCGAGAGTGATGGTCTTACCAGT 1897 Query 225690 CAAAGTTTTTATGAACACTTGCAT 225713 |||||| || | ||| | || ||| Sbjct 1898 CAAAGTCTTAACGAAAATTTACAT 1921 Score = 140 bits (154), Expect = 8e-28 Identities = 155/207 (75%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 ||| || || | ||| ||||| ||||| ||||| | |||||| |||| | |||||| || Sbjct 1478 TCTAAGAACTAAGTGAAGAGTAGATTCCTTTTGAATATTGTAGTCGGAAAGAGTTCTTCC 1537 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 |||||| || | || |||||||| ||||||| || || || || |||||||||||||| Sbjct 1538 ATCTTCAAGTTATTTACCAGCGAAAATAAGTCTTTATTAATCAGGAGGAATACCTTCCTT 1597 Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677 |||| ||||| ||| || ||| || | ||| |||| ||| || || | || || Sbjct 1598 ATCTTAAATCTTAGCCTTGACGTTTTCAATAGAGTCAGAGGCTTCAACATCGAGAGTAAT 1657 Query 225678 CGTCTTGCCCGTCAAAGTTTTTATGAA 225704 ||||| || |||||||| || ||||| Sbjct 1658 GGTCTTACCAGTCAAAGTCTTAATGAA 1684 Score = 129 bits (142), Expect = 1e-24 Identities = 149/201 (74%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 ||||| || | ||| ||||| ||||| ||||| | |||||| || | | |||||| || Sbjct 1250 TCTCAATACTAAGTGAAGAGTAGATTCCTTTTGAATATTGTAGTCAGAAAGAGTTCTTCC 1309 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 |||||| || | || |||||||| || |||| || || || || |||||||||||||| Sbjct 1310 ATCTTCAAGTTATTTACCAGCGAAAATGAGTCTTTATTAATCAGGAGGAATACCTTCCTT 1369 Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677 |||| ||||| ||| || ||| || | ||| |||| ||| || |||| ||||| Sbjct 1370 ATCTTAAATCTTAGCCTTGACGTTTTCAATAGAGTCAGAGGCTTCAACATCTAGAGTGAT 1429 Query 225678 CGTCTTGCCCGTCAAAGTTTT 225698 || || || ||||| ||||| Sbjct 1430 TGTTTTACCAGTCAATGTTTT 1450 >seq24 Length=964434 Score = 123 bits (136), Expect = 6e-23 Identities = 124/161 (77%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 225556 CCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCC 225615 || ||||| || ||||| |||||||||||||||| ||||| ||||| || ||||||||| Sbjct 626673 CCGTCTTCAAGTTGCTTACCAGCGAAGATAAGTCTTTGTTAATCGGGGGGGATACCTTCC 626614 Query 225616 TTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTG 225675 |||||||||||||| ||| || ||| || || || || | ||| ||||| || || Sbjct 626613 TTGTCTTGGATCTTAGCCTTGACGTTTTCAATAGTATCGGAAGCTTCAACGTCCAAAGTA 626554 Query 225676 ATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 || || || || || | ||||| | ||| | ||||||||| Sbjct 626553 ATGGTTTTACCAGTGAGGGTTTTAACGAAAATTTGCATTTT 626513 Score = 87.8 bits (96), Expect = 4e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 ||| ||||| | |||||| || ||||| ||||| | |||||| || | | ||||| || Sbjct 627524 TCTAAGGACTAAGTGGAGGGTAGATTCCTTTTGAATATTGTAGTCAGAAAGGGTTCTGCC 627465 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTT 225595 ||||| || ||||| |||||||||||||||| ||||| Sbjct 627464 GTCTTCAAGTTGCTTACCAGCGAAGATAAGTCTTTGTT 627427 >seq135 Length=235529 Score = 114 bits (126), Expect = 3e-20 Identities = 95/116 (82%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 225510 GTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTG 225569 ||||||||| ||||| |||| | |||||| || | | ||||| |||||||| || | Sbjct 235414 GTGGAGAGTTGATTCCTTTTAAATATTGTAGTCAGAAAGGGTTCTTCCATCTTCAAGTTA 235473 Query 225570 CTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGA 225625 ||| ||||| |||||||||| || ||| ||||| |||||||||||||||||||||| Sbjct 235474 CTTACCAGCAAAGATAAGTCTTTATTGATCGGGGGGAATACCTTCCTTGTCTTGGA 235529 >seq105 Length=326417 Score = 114 bits (126), Expect = 3e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 225511 TGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGC 225570 |||||||| |||||||||| || ||| ||||| | | |||||| |||||||| || ||| Sbjct 8050 TGGAGAGTTGATTCTTTTTAGATATTATAATCAGAGATAGTTCTTCCATCTTCAAGTTGC 8109 Query 225571 TTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTT 225630 || || || || ||||||| || || || || || ||||||||||| ||||| || | Sbjct 8110 TTTCCTGCAAAAATAAGTCTTTATTAATCAGGAGGGATACCTTCCTTATCTTGAATTTAA 8169 Query 225631 TGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTC 225690 || ||| ||| || || || | || | | ||| | ||||| ||||| || || Sbjct 8170 GTTTTAACATTTTCAATAGTATCAGCGGAATTAATGTCAAGAGTGATAGTCTTTCCTGTA 8229 Query 225691 AAAGTTTTTATGAACACTTGCAT 225713 | |||||||| || || | ||| Sbjct 8230 AGAGTTTTTACAAAAACCTACAT 8252 Score = 104 bits (114), Expect = 6e-17 Identities = 146/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 225496 AGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTC 225555 ||||| | || | ||| || || |||||||||| || ||| || || | | |||||| Sbjct 7576 AGTCTTAACACTAAGTGAAGGGTAGATTCTTTTTAGATATTATAGTCAGAGATAGTTCTT 7635 Query 225556 CCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCC 225615 |||||||| || ||||| || || || ||||||| || || || || || ||||||||| Sbjct 7636 CCATCTTCAAGTTGCTTTCCTGCAAATATAAGTCTTTATTAATCAGGAGGGATACCTTCC 7695 Query 225616 TTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTG 225675 || ||||| || | || ||| ||| ||||| || | || | | || | ||| Sbjct 7696 TTATCTTGAATTTAAGTTTTAACATTTTCAATGGTATCAGCGGAATTAATATCAAGAGTG 7755 Query 225676 ATCGTCTTGCCCGTCAAAGTTTTTA 225700 || ||||| || || | |||||||| Sbjct 7756 ATAGTCTTTCCTGTAAGAGTTTTTA 7780 Score = 84.2 bits (92), Expect = 5e-11 Identities = 139/201 (69%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 ||| || || | ||||| || |||||||| | || || || | | |||||| || Sbjct 8265 TCTAAGAACTAAATGGAGTGTTGATTCTTTAGAAATGTTATAGTCAGAGATAGTTCTTCC 8324 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 ||| || || | ||| ||||| || ||||||| || || || || || ||||||||||| Sbjct 8325 ATCATCGAGTTACTTACCAGCAAAAATAAGTCTTTATTAATCAGGAGGGATACCTTCCTT 8384 Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677 |||| ||||| || | | ||| || | |||||| | | || |||| || || Sbjct 8385 ATCTTATATCTTAGTTTTAATATTTTCTATAGAGTCTGAAGACTAGACATCTAGAGTAAT 8444 Query 225678 CGTCTTGCCCGTCAAAGTTTT 225698 ||||| || || || ||||| Sbjct 8445 AGTCTTTCCAGTTAATGTTTT 8465 >seq121 Length=281021 Score = 105 bits (116), Expect = 2e-17 Identities = 149/209 (71%), Gaps = 8/209 (4%) Strand=Plus/Plus Query 225510 GTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTG 225569 ||| || || || ||||||| || ||| || || | |||||| ||||| ||||| | Sbjct 223701 GTGAAGGGTAGAGTCTTTTTAGATATTATAGTCATAGATAGTTCTTCCATCCTCTAGTTA 223760 Query 225570 CTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTT 225629 ||| ||||| || ||||||| | |||||| || ||||||||||| || |||| ||||| Sbjct 223761 CTTACCAGCAAAAATAAGTCTCTATTGGTCTGGAGGAATACCTTCTTTATCTTAAATCTT 223820 Query 225630 TTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCA----CGTCTAACGTGATCGTCTTGC 225685 | ||| ||| ||| || || ||||| |||| || | || || || || | Sbjct 223821 TGCCTTAACATTTTCTATTGTTTCTGA----TCCATTAGTTTCAAGGGTAATGGTTTTAC 223876 Query 225686 CCGTCAAAGTTTTTATGAACACTTGCATT 225714 | ||||||||||| || || | || |||| Sbjct 223877 CTGTCAAAGTTTTAATAAAAAGTTACATT 223905 Score = 87.8 bits (96), Expect = 4e-12 Identities = 140/201 (70%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 ||| || || | || || || ||||||||| || ||| || || | | |||||| || Sbjct 224651 TCTAAGAACTAAATGAAGGGTTGATTCTTTTGAGATATTATAGTCAGAGATAGTTCTTCC 224710 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 |||||| || ||||| ||||| || || |||| || | || || || ||||||||||| Sbjct 224711 ATCTTCAAGTTGCTTACCAGCAAAAATGAGTCTTTACTAATCAGGAGGGATACCTTCCTT 224770 Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677 |||| ||||| || | | ||| || | |||||| | | || |||| || | Sbjct 224771 ATCTTATATCTTAGTTTTGATATTTTCTATAGAGTCTGATGACTAAACATCTAGAGTAAC 224830 Query 225678 CGTCTTGCCCGTCAAAGTTTT 225698 ||||| || || || ||||| Sbjct 224831 AGTCTTACCAGTTAATGTTTT 224851 >seq41 Length=642683 Score = 100 bits (110), Expect = 7e-16 Identities = 85/105 (81%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 225510 GTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTG 225569 ||| ||||| ||||| ||||| | ||| || || | | |||||| |||||||| || || Sbjct 166216 GTGAAGAGTTGATTCCTTTTGAATATTATAGTCAGAAAGAGTTCTGCCATCTTCAAGTTG 166157 Query 225570 CTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTC 225614 ||| |||||||||||||||| ||||| || || ||||||||||| Sbjct 166156 CTTACCAGCGAAGATAAGTCTTTGTTAATCAGGGGGAATACCTTC 166112 >seq9 Length=1304334 Score = 91.5 bits (100), Expect = 4e-13 Identities = 83/105 (79%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 4470 GAATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACC 4529 ||| ||||||||||| ||||| || ||||| || || || |||||||| || |||||||| Sbjct 922921 GAAGATTTGACCATCGGTAATGGAAATAACGTTGGTGGGAATATAAGCGGAGACATCACC 922980 Query 4530 TGCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACC 4574 ||||| ||||| | ||| || ||||| || | || ||| |||| Sbjct 922981 AGCTTGGGTTTCAATAACGGGCAAGGCAGTCAAAGAACCAGCACC 923025 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192526234225550