Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetrahymena_20borealis_20[genbank_20GCA_5F000260095.1_202012-05-01] 325 sequences; 93,506,076 total letters Query= NC_030240.1 Length=128058 Score E Sequences producing significant alignments: (Bits) Value seq121 84.2 2e-11 seq77 84.2 2e-11 >seq121 Length=281021 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 101011 GCCGCCTCGCAATCTTAACACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGC 101070 ||| |||| | |||||||| | ||| | || || ||||||| ||||| || || Sbjct 223677 GCCACCTCTTAGCCTTAACACTAAGTGAAGGGTAGAGTCTTTTTAGATATTATAGTCATA 223736 Query 101071 CATAGTTTTGGAATCTTCCAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGG 101130 |||||| | ||| || | || || || ||| | ||||| || | ||||||| || Sbjct 223737 GATAGTTCTTCCATCCTCTAGTTACTTACCAGCAAAAATAAGTCTCTATTGGTCTGGAGG 223796 Query 101131 CACGCCTTCTTTGTCGGCAATTTTTTGTTTCACATCGGCCACCGTCTCTGTGGACGTTGT 101190 | |||||||| || ||| ||| || |||| | | || |||| | || Sbjct 223797 AATACCTTCTTTATCTTAAATCTTTGCCTTAACATTTTCTATTGTTTCTGATCCATTAGT 223856 Query 101191 TTCGACGGTAATAGTTTTGCCCGTCAATGTTTTAATAAAAATTTGCATT 101239 ||| | |||||| ||||| || ||||| ||||||||||||| || |||| Sbjct 223857 TTCAAGGGTAATGGTTTTACCTGTCAAAGTTTTAATAAAAAGTTACATT 223905 >seq77 Length=437778 Score = 84.2 bits (92), Expect = 2e-11 Identities = 84/109 (77%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 101012 CCGCCTCGCAATCTTAACACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCC 101071 || |||| |||||||| || | ||| | ||| |||||||||||||||||||| |||| Sbjct 1695 CCACCTCTTAATCTTAATACTAAGTGAAGAGTAGATTCTTTTTGAATATTGTAGTCGGAA 1754 Query 101072 ATAGTTTTGGAATCTTCCAATTGTTTGCCCGCATATATAAGCCTTTGTT 101120 | |||| | |||||| | |||||| || ||| | ||||| |||| || Sbjct 1755 AGAGTTCTTCCATCTTCGAGTTGTTTACCAGCAAAAATAAGTCTTTATT 1803 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 409659177359175